Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25800 AT5G25800 |
| fragaria_vesca | FvH4_2g15020 FvH4_2g15020 FvH4_4g14244 |
| malus_domestica | MD05G1011300.v1.1 MD10G1011100.v1.1 |
| prunus_persica | Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 |
| pyrus_communis | pycom05g00660 pycom10g00710 |
| rosa_chinensis | RchiOBHm_Chr6g0277571 |
| rosa_laevigata | RLG00000013291 |
| rosa_multiflora | Rmu_co8201914.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200 |
| rosa_rugosa | Rorug06G0109700 |
| rosa_samantha | Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000 |
| rosa_wichuraiana | Rw6G019280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 247 |
| AccI | GTMKAC | 1 cut(s) | 765 |
| AccII | CGCG | 1 cut(s) | 1632 |
| AccIII | TCCGGA | 1 cut(s) | 1369 |
| AciI | CCGC | 2 cut(s) | 245, 1630 |
| AclWI | GGATC | 6 cut(s) | 631, 982, 1005, 1361, 1374, 1614 |
| AcoI | YGGCCR | 1 cut(s) | 1045 |
| AcsI | RAATTY | 5 cut(s) | 335, 845, 1010, 1426, 1479 |
| AcuI | CTGAAG | 2 cut(s) | 603, 1493 |
| AcyI | GRCGYC | 1 cut(s) | 140 |
| AdeI | CACNNNGTG | 1 cut(s) | 1626 |
| AfaI | GTAC | 5 cut(s) | 299, 448, 956, 962, 1510 |
| AfeI | AGCGCT | 1 cut(s) | 83 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 283, 1118, 1675 |
| AflII | CTTAAG | 1 cut(s) | 320 |
| AflIII | ACRYGT | 1 cut(s) | 1415 |
| AgsI | TTSAA | 6 cut(s) | 179, 563, 583, 1061, 1339, 1351 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 822 |
| AhlI | ACTAGT | 1 cut(s) | 184 |
| AjnI | CCWGG | 5 cut(s) | 277, 282, 468, 589, 776 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1586, 1618 |
| Alw21I | GWGCWC | 1 cut(s) | 1662 |
| Alw26I | GTCTC | 2 cut(s) | 332, 863 |
| AlwI | GGATC | 6 cut(s) | 631, 982, 1005, 1361, 1374, 1614 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1247 |
| Aor13HI | TCCGGA | 1 cut(s) | 1369 |
| Aor51HI | AGCGCT | 1 cut(s) | 83 |
| AoxI | GGCC | 4 cut(s) | 106, 280, 353, 1045 |
| ApeKI | GCWGC | 4 cut(s) | 60, 290, 1073, 1520 |
| ApoI | RAATTY | 5 cut(s) | 335, 845, 1010, 1426, 1479 |
| AspLEI | GCGC | 1 cut(s) | 84 |
| AspS9I | GGNCC | 4 cut(s) | 107, 502, 1109, 1567 |
| AsuC2I | CCSGG | 1 cut(s) | 1006 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 718 |
| AvaII | GGWCC | 3 cut(s) | 502, 1109, 1567 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 933, 952, 966, 985, 1019, 1052 |
| BalI | TGGCCA | 1 cut(s) | 1047 |
| BamHI | GGATCC | 1 cut(s) | 1366 |
| BanII | GRGCYC | 1 cut(s) | 1662 |
| BbsI | GAAGAC | 1 cut(s) | 570 |
| Bbv12I | GWGCWC | 1 cut(s) | 1662 |
| BbvCI | CCTCAGC | 1 cut(s) | 1674 |
| BbvI | GCAGC | 4 cut(s) | 72, 302, 1060, 1507 |
| BccI | CCATC | 5 cut(s) | 377, 803, 881, 1037, 1138 |
| BceAI | ACGGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 5 cut(s) | 279, 284, 470, 591, 778 |
| BciVI | GTATCC | 1 cut(s) | 1489 |
| BcnI | CCSGG | 1 cut(s) | 1006 |
| BcoDI | GTCTC | 2 cut(s) | 332, 863 |
| BcuI | ACTAGT | 1 cut(s) | 184 |
| BfaI | CTAG | 6 cut(s) | 185, 731, 878, 932, 1500, 1571 |
| BfmI | CTRYAG | 2 cut(s) | 453, 1582 |
| BfoI | RGCGCY | 1 cut(s) | 85 |
| BfrI | CTTAAG | 1 cut(s) | 320 |
| BfuI | GTATCC | 1 cut(s) | 1489 |
| BisI | GCNGC | 5 cut(s) | 61, 291, 1074, 1521, 1630 |
| BlsI | GCNGC | 5 cut(s) | 62, 292, 1075, 1522, 1631 |
| Bme1390I | CCNGG | 6 cut(s) | 279, 284, 470, 591, 778, 1006 |
| Bme18I | GGWCC | 3 cut(s) | 502, 1109, 1567 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 822 |
| BmgT120I | GGNCC | 4 cut(s) | 107, 502, 1109, 1567 |
| BmiI | GGNNCC | 3 cut(s) | 1111, 1368, 1568 |
| BmrFI | CCNGG | 6 cut(s) | 279, 284, 470, 591, 778, 1006 |
| BmsI | GCATC | 5 cut(s) | 277, 391, 482, 1054, 1472 |
| BpiI | GAAGAC | 1 cut(s) | 570 |
| BpmI | CTGGAG | 1 cut(s) | 40 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1674 |
| BpuMI | CCSGG | 1 cut(s) | 1006 |
| BsaAI | YACGTR | 1 cut(s) | 1508 |
| BsaHI | GRCGYC | 1 cut(s) | 140 |
| BsaI | GGTCTC | 1 cut(s) | 863 |
| BsaJI | CCNNGG | 4 cut(s) | 277, 350, 891, 967 |
| BsaWI | WCCGGW | 1 cut(s) | 1369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 947, 977 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 283, 1118, 1675 |
| Bse1I | ACTGG | 2 cut(s) | 356, 1561 |
| BseAI | TCCGGA | 1 cut(s) | 1369 |
| BseBI | CCWGG | 5 cut(s) | 279, 284, 470, 591, 778 |
| BseDI | CCNNGG | 4 cut(s) | 277, 350, 891, 967 |
| BseGI | GGATG | 4 cut(s) | 292, 491, 873, 1048 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 283, 1118, 1675 |
| BseMII | CTCAG | 4 cut(s) | 30, 382, 1337, 1665 |
| BseNI | ACTGG | 2 cut(s) | 356, 1561 |
| BseRI | GAGGAG | 1 cut(s) | 1174 |
| BseXI | GCAGC | 4 cut(s) | 72, 302, 1060, 1507 |
| BsgI | GTGCAG | 1 cut(s) | 1537 |
| Bsh1236I | CGCG | 1 cut(s) | 1632 |
| BshFI | GGCC | 4 cut(s) | 108, 282, 355, 1047 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1662 |
| BsiSI | CCGG | 2 cut(s) | 1006, 1370 |
| BslFI | GGGAC | 2 cut(s) | 260, 1580 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 283, 1118, 1675 |
| BsmAI | GTCTC | 2 cut(s) | 332, 863 |
| BsmFI | GGGAC | 2 cut(s) | 260, 1580 |
| BsmI | GAATGC | 3 cut(s) | 393, 886, 1345 |
| BsnI | GGCC | 4 cut(s) | 108, 282, 355, 1047 |
| Bso31I | GGTCTC | 1 cut(s) | 863 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1662 |
| Bsp13I | TCCGGA | 1 cut(s) | 1369 |
| Bsp1407I | TGTACA | 1 cut(s) | 954 |
| Bsp143I | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| BspACI | CCGC | 2 cut(s) | 245, 1630 |
| BspANI | GGCC | 4 cut(s) | 108, 282, 355, 1047 |
| BspCNI | CTCAG | 4 cut(s) | 31, 381, 1336, 1666 |
| BspEI | TCCGGA | 1 cut(s) | 1369 |
| BspFNI | CGCG | 1 cut(s) | 1632 |
| BspLI | GGNNCC | 3 cut(s) | 1111, 1368, 1568 |
| BspPI | GGATC | 6 cut(s) | 631, 982, 1005, 1361, 1374, 1614 |
| BspQI | GCTCTTC | 1 cut(s) | 1650 |
| BspTI | CTTAAG | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 1 cut(s) | 863 |
| BsrBI | CCGCTC | 1 cut(s) | 247 |
| BsrGI | TGTACA | 1 cut(s) | 954 |
| BsrI | ACTGG | 2 cut(s) | 356, 1561 |
| BssECI | CCNNGG | 4 cut(s) | 277, 350, 891, 967 |
| BssMI | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| BssNI | GRCGYC | 1 cut(s) | 140 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 891 |
| Bst2UI | CCWGG | 5 cut(s) | 279, 284, 470, 591, 778 |
| Bst4CI | ACNGT | 3 cut(s) | 1055, 1159, 1579 |
| Bst6I | CTCTTC | 3 cut(s) | 612, 1650, 1697 |
| BstACI | GRCGYC | 1 cut(s) | 140 |
| BstAFI | CTTAAG | 1 cut(s) | 320 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1073 |
| BstAUI | TGTACA | 1 cut(s) | 954 |
| BstBAI | YACGTR | 1 cut(s) | 1508 |
| BstC8I | GCNNGC | 2 cut(s) | 80, 347 |
| BstDEI | CTNAG | 4 cut(s) | 39, 368, 1323, 1674 |
| BstDSI | CCRYGG | 1 cut(s) | 967 |
| BstF5I | GGATG | 4 cut(s) | 292, 491, 873, 1048 |
| BstFNI | CGCG | 1 cut(s) | 1632 |
| BstH2I | RGCGCY | 1 cut(s) | 85 |
| BstHHI | GCGC | 1 cut(s) | 84 |
| BstKTI | GATC | 5 cut(s) | 626, 977, 1000, 1369, 1609 |
| BstMAI | GTCTC | 2 cut(s) | 332, 863 |
| BstMBI | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 60, 1073, 1635, 1679 |
| BstNI | CCWGG | 5 cut(s) | 279, 284, 470, 591, 778 |
| BstNSI | RCATGY | 2 cut(s) | 417, 1419 |
| BstSCI | CCNGG | 6 cut(s) | 277, 282, 468, 589, 776, 1004 |
| BstSFI | CTRYAG | 2 cut(s) | 453, 1582 |
| BstSNI | TACGTA | 1 cut(s) | 1508 |
| BstUI | CGCG | 1 cut(s) | 1632 |
| BstV1I | GCAGC | 4 cut(s) | 72, 302, 1060, 1507 |
| BstV2I | GAAGAC | 1 cut(s) | 570 |
| BstX2I | RGATCY | 3 cut(s) | 974, 997, 1366 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 880 |
| BstYI | RGATCY | 3 cut(s) | 974, 997, 1366 |
| BsuI | GTATCC | 1 cut(s) | 1489 |
| BsuRI | GGCC | 4 cut(s) | 108, 282, 355, 1047 |
| BtgI | CCRYGG | 1 cut(s) | 967 |
| BtgZI | GCGATG | 1 cut(s) | 459 |
| BtsCI | GGATG | 4 cut(s) | 292, 491, 873, 1048 |
| BtsI | GCAGTG | 1 cut(s) | 954 |
| BtsIMutI | CAGTG | 4 cut(s) | 790, 954, 1133, 1554 |
| Cac8I | GCNNGC | 2 cut(s) | 80, 347 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1247 |
| CfoI | GCGC | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 4 cut(s) | 107, 502, 1109, 1567 |
| CseI | GACGC | 1 cut(s) | 148 |
| CsiI | ACCWGGT | 1 cut(s) | 776 |
| Csp6I | GTAC | 5 cut(s) | 298, 447, 955, 961, 1509 |
| CviAII | CATG | 9 cut(s) | 192, 222, 414, 1049, 1106, 1238, 1416, 1540, 1562 |
| CviQI | GTAC | 5 cut(s) | 298, 447, 955, 961, 1509 |
| DdeI | CTNAG | 4 cut(s) | 39, 368, 1323, 1674 |
| DpnI | GATC | 5 cut(s) | 625, 976, 999, 1368, 1608 |
| DpnII | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| DraIII | CACNNNGTG | 1 cut(s) | 1626 |
| DriI | GACNNNNNGTC | 1 cut(s) | 822 |
| EaeI | YGGCCR | 1 cut(s) | 1045 |
| Eam1104I | CTCTTC | 3 cut(s) | 612, 1650, 1697 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 822 |
| EarI | CTCTTC | 3 cut(s) | 612, 1650, 1697 |
| Ecl136II | GAGCTC | 1 cut(s) | 1660 |
| Eco105I | TACGTA | 1 cut(s) | 1508 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 891 |
| Eco147I | AGGCCT | 1 cut(s) | 282 |
| Eco24I | GRGCYC | 1 cut(s) | 1662 |
| Eco31I | GGTCTC | 1 cut(s) | 863 |
| Eco32I | GATATC | 1 cut(s) | 1404 |
| Eco47I | GGWCC | 3 cut(s) | 502, 1109, 1567 |
| Eco47III | AGCGCT | 1 cut(s) | 83 |
| Eco53kI | GAGCTC | 1 cut(s) | 1660 |
| Eco57I | CTGAAG | 2 cut(s) | 603, 1493 |
| EcoICRI | GAGCTC | 1 cut(s) | 1660 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1567 |
| EcoRI | GAATTC | 1 cut(s) | 1426 |
| EcoRII | CCWGG | 5 cut(s) | 277, 282, 468, 589, 776 |
| EcoRV | GATATC | 1 cut(s) | 1404 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 891 |
| EcoT38I | GRGCYC | 1 cut(s) | 1662 |
| ErhI | CCWWGG | 2 cut(s) | 350, 891 |
| FaeI | CATG | 9 cut(s) | 195, 225, 417, 1052, 1109, 1241, 1419, 1543, 1565 |
| FaqI | GGGAC | 2 cut(s) | 260, 1580 |
| FatI | CATG | 9 cut(s) | 191, 221, 413, 1048, 1105, 1237, 1415, 1539, 1561 |
| FblI | GTMKAC | 1 cut(s) | 765 |
| Fnu4HI | GCNGC | 5 cut(s) | 61, 291, 1074, 1521, 1630 |
| FokI | GGATG | 4 cut(s) | 299, 478, 860, 1055 |
| FriOI | GRGCYC | 1 cut(s) | 1662 |
| Fsp4HI | GCNGC | 5 cut(s) | 61, 291, 1074, 1521, 1630 |
| FspBI | CTAG | 6 cut(s) | 185, 731, 878, 932, 1500, 1571 |
| GlaI | GCGC | 1 cut(s) | 83 |
| GluI | GCNGC | 5 cut(s) | 61, 291, 1074, 1521, 1630 |
| GsuI | CTGGAG | 1 cut(s) | 40 |
| HaeII | RGCGCY | 1 cut(s) | 85 |
| HaeIII | GGCC | 4 cut(s) | 108, 282, 355, 1047 |
| HapII | CCGG | 2 cut(s) | 1006, 1370 |
| HgaI | GACGC | 1 cut(s) | 148 |
| HhaI | GCGC | 1 cut(s) | 84 |
| Hin1I | GRCGYC | 1 cut(s) | 140 |
| Hin1II | CATG | 9 cut(s) | 195, 225, 417, 1052, 1109, 1241, 1419, 1543, 1565 |
| Hin6I | GCGC | 1 cut(s) | 82 |
| HinP1I | GCGC | 1 cut(s) | 82 |
| HindIII | AAGCTT | 2 cut(s) | 27, 1266 |
| HinfI | GANTC | 5 cut(s) | 325, 488, 789, 1149, 1321 |
| HpaII | CCGG | 2 cut(s) | 1006, 1370 |
| HphI | GGTGA | 2 cut(s) | 215, 718 |
| Hpy166II | GTNNAC | 3 cut(s) | 502, 766, 862 |
| Hpy188I | TCNGA | 7 cut(s) | 40, 162, 382, 1228, 1258, 1333, 1468 |
| Hpy188III | TCNNGA | 8 cut(s) | 179, 621, 839, 995, 1318, 1351, 1370, 1431 |
| Hpy8I | GTNNAC | 3 cut(s) | 502, 766, 862 |
| HpyAV | CCTTC | 4 cut(s) | 15, 200, 627, 1468 |
| HpyCH4III | ACNGT | 3 cut(s) | 1055, 1159, 1579 |
| HpyCH4IV | ACGT | 1 cut(s) | 1507 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 60, 1073, 1635, 1679 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 368, 1323, 1674 |
| HpySE526I | ACGT | 1 cut(s) | 1507 |
| Hsp92I | GRCGYC | 1 cut(s) | 140 |
| Hsp92II | CATG | 9 cut(s) | 195, 225, 417, 1052, 1109, 1241, 1419, 1543, 1565 |
| HspAI | GCGC | 1 cut(s) | 82 |
| Kpn2I | TCCGGA | 1 cut(s) | 1369 |
| Kzo9I | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| LguI | GCTCTTC | 1 cut(s) | 1650 |
| LmnI | GCTCC | 4 cut(s) | 59, 89, 685, 1665 |
| Lsp1109I | GCAGC | 4 cut(s) | 72, 302, 1060, 1507 |
| LweI | GCATC | 5 cut(s) | 277, 391, 482, 1054, 1472 |
| MabI | ACCWGGT | 1 cut(s) | 776 |
| MaeI | CTAG | 6 cut(s) | 185, 731, 878, 932, 1500, 1571 |
| MaeII | ACGT | 1 cut(s) | 1507 |
| MaeIII | GTNAC | 4 cut(s) | 187, 667, 706, 814 |
| MalI | GATC | 5 cut(s) | 625, 976, 999, 1368, 1608 |
| MbiI | CCGCTC | 1 cut(s) | 247 |
| MboI | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| MboII | GAAGA | 8 cut(s) | 56, 85, 449, 575, 599, 1073, 1263, 1667 |
| MflI | RGATCY | 3 cut(s) | 974, 997, 1366 |
| MhlI | GDGCHC | 1 cut(s) | 1662 |
| MlsI | TGGCCA | 1 cut(s) | 1047 |
| MluNI | TGGCCA | 1 cut(s) | 1047 |
| MlyI | GAGTC | 3 cut(s) | 334, 1143, 1315 |
| Mox20I | TGGCCA | 1 cut(s) | 1047 |
| MroI | TCCGGA | 1 cut(s) | 1369 |
| MscI | TGGCCA | 1 cut(s) | 1047 |
| MseI | TTAA | 9 cut(s) | 135, 234, 321, 744, 828, 914, 1379, 1449, 1589 |
| MslI | CAYNNNNRTG | 1 cut(s) | 878 |
| Msp20I | TGGCCA | 1 cut(s) | 1047 |
| MspA1I | CMGCKG | 1 cut(s) | 372 |
| MspCI | CTTAAG | 1 cut(s) | 320 |
| MspI | CCGG | 2 cut(s) | 1006, 1370 |
| MspR9I | CCNGG | 6 cut(s) | 279, 284, 470, 591, 778, 1006 |
| Mva1269I | GAATGC | 3 cut(s) | 393, 886, 1345 |
| MvaI | CCWGG | 5 cut(s) | 279, 284, 470, 591, 778 |
| MvnI | CGCG | 1 cut(s) | 1632 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 60, 1073, 1635, 1679 |
| NciI | CCSGG | 1 cut(s) | 1006 |
| NdeII | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| NlaIII | CATG | 9 cut(s) | 195, 225, 417, 1052, 1109, 1241, 1419, 1543, 1565 |
| NlaIV | GGNNCC | 3 cut(s) | 1111, 1368, 1568 |
| NmuCI | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| NspI | RCATGY | 2 cut(s) | 417, 1419 |
| PceI | AGGCCT | 1 cut(s) | 282 |
| PciI | ACATGT | 1 cut(s) | 1415 |
| PciSI | GCTCTTC | 1 cut(s) | 1650 |
| PctI | GAATGC | 3 cut(s) | 393, 886, 1345 |
| PfeI | GAWTC | 2 cut(s) | 488, 789 |
| PkrI | GCNGC | 5 cut(s) | 62, 292, 1075, 1522, 1631 |
| PleI | GAGTC | 3 cut(s) | 333, 1143, 1315 |
| PpsI | GAGTC | 3 cut(s) | 333, 1143, 1315 |
| Ppu21I | YACGTR | 1 cut(s) | 1508 |
| PpuMI | RGGWCCY | 1 cut(s) | 1567 |
| PscI | ACATGT | 1 cut(s) | 1415 |
| Psp124BI | GAGCTC | 1 cut(s) | 1662 |
| Psp5II | RGGWCCY | 1 cut(s) | 1567 |
| Psp6I | CCWGG | 5 cut(s) | 277, 282, 468, 589, 776 |
| PspGI | CCWGG | 5 cut(s) | 277, 282, 468, 589, 776 |
| PspN4I | GGNNCC | 3 cut(s) | 1111, 1368, 1568 |
| PspPI | GGNCC | 4 cut(s) | 107, 502, 1109, 1567 |
| PspPPI | RGGWCCY | 1 cut(s) | 1567 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1247 |
| PsuI | RGATCY | 3 cut(s) | 974, 997, 1366 |
| PvuII | CAGCTG | 1 cut(s) | 372 |
| RsaI | GTAC | 5 cut(s) | 299, 448, 956, 962, 1510 |
| RsaNI | GTAC | 5 cut(s) | 298, 447, 955, 961, 1509 |
| RseI | CAYNNNNRTG | 1 cut(s) | 878 |
| SacI | GAGCTC | 1 cut(s) | 1662 |
| SapI | GCTCTTC | 1 cut(s) | 1650 |
| SaqAI | TTAA | 9 cut(s) | 135, 234, 321, 744, 828, 914, 1379, 1449, 1589 |
| SatI | GCNGC | 5 cut(s) | 61, 291, 1074, 1521, 1630 |
| Sau3AI | GATC | 5 cut(s) | 623, 974, 997, 1366, 1606 |
| Sau96I | GGNCC | 4 cut(s) | 107, 502, 1109, 1567 |
| SchI | GAGTC | 3 cut(s) | 334, 1143, 1315 |
| ScrFI | CCNGG | 6 cut(s) | 279, 284, 470, 591, 778, 1006 |
| SduI | GDGCHC | 1 cut(s) | 1662 |
| SexAI | ACCWGGT | 1 cut(s) | 776 |
| SfaNI | GCATC | 5 cut(s) | 277, 391, 482, 1054, 1472 |
| SfcI | CTRYAG | 2 cut(s) | 453, 1582 |
| SinI | GGWCC | 3 cut(s) | 502, 1109, 1567 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 878 |
| SmlI | CTYRAG | 1 cut(s) | 320 |
| SmoI | CTYRAG | 1 cut(s) | 320 |
| SnaBI | TACGTA | 1 cut(s) | 1508 |
| SpeI | ACTAGT | 1 cut(s) | 184 |
| SseBI | AGGCCT | 1 cut(s) | 282 |
| SsiI | CCGC | 2 cut(s) | 245, 1630 |
| SspMI | CTAG | 6 cut(s) | 185, 731, 878, 932, 1500, 1571 |
| SstI | GAGCTC | 1 cut(s) | 1662 |
| StuI | AGGCCT | 1 cut(s) | 282 |
| StyD4I | CCNGG | 6 cut(s) | 277, 282, 468, 589, 776, 1004 |
| StyI | CCWWGG | 2 cut(s) | 350, 891 |
| TaaI | ACNGT | 3 cut(s) | 1055, 1159, 1579 |
| TaiI | ACGT | 1 cut(s) | 1510 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TatI | WGTACW | 3 cut(s) | 297, 446, 954 |
| TauI | GCSGC | 1 cut(s) | 1632 |
| TfiI | GAWTC | 2 cut(s) | 488, 789 |
| Tru1I | TTAA | 9 cut(s) | 135, 234, 321, 744, 828, 914, 1379, 1449, 1589 |
| Tru9I | TTAA | 9 cut(s) | 135, 234, 321, 744, 828, 914, 1379, 1449, 1589 |
| TscAI | CASTG | 4 cut(s) | 790, 954, 1140, 1561 |
| TseFI | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| TseI | GCWGC | 4 cut(s) | 60, 290, 1073, 1520 |
| Tsp45I | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| TspDTI | ATGAA | 4 cut(s) | 480, 524, 651, 1278 |
| TspGWI | ACGGA | 1 cut(s) | 1156 |
| TspRI | CASTG | 4 cut(s) | 790, 954, 1140, 1561 |
| Vha464I | CTTAAG | 1 cut(s) | 320 |
| VpaK11BI | GGWCC | 3 cut(s) | 502, 1109, 1567 |
| XapI | RAATTY | 5 cut(s) | 335, 845, 1010, 1426, 1479 |
| XceI | RCATGY | 2 cut(s) | 417, 1419 |
| XmiI | GTMKAC | 1 cut(s) | 765 |
| XspI | CTAG | 6 cut(s) | 185, 731, 878, 932, 1500, 1571 |