MD05G1011300.v1.1

Small RNA degrading nuclease

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
2346389 .. 2353465
7077 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1011300.v1.1.491

Sequence Viewer

Length: 1710 bp
ATGCCTTCTTCCCCCATTAAAGTCGAAACTTTAGCTTCGGAGGAAGAAGTGAGCTCAAGCAGCAACGCAAATGTTAGCAACCGCTCCACTTTTTTCGATGTCTACGGCCCTCAAAGTAAAGCAGAGGTGATTTTTAAGACGCTGGAAACCGACACAACTCTGAATTTGCAAGAGGTTCAAGAACTGGTGACATGGGTGCTTGCTGAAGGTTTCATGCCATCATGGGTTTTTATTAAGAACAAGCCCCTCATTCCCAAAGTGGTTATGCTTTATGTCCCAGGACTGGATGCAGCATTGTACTTAGCACATCGTCGACTTCTTAAGAGTCTCAAAGCATTGTGTAGCAAGCCAAGGCCAGTTTTAGCTCTCAGCTGTATGTCAGATGGGATGCAGACGATTGATGCACTCCTGACGAGCAAAGTGAAAAGAAAGAGGGAAGAAAGTAGTTTAACTGTGGAGAAATCTAACCTGGCATCCAAACAAGATGATCTATCCTCAGTGGACCTCATGAAAGATCTACCTTTCCCTATTACATTTTACACACTTACAACAAAACAACTTGAAGACAATGGATATTGCTTCAATTTGCCAGGTTTTCTTTCTACTCTTCCGGCCCCTTCAGGATCATCCCACTATCAAATGCTGGCACTTGATTGCGAGATGTGTATCACAAGTGAGGGTTTTGAGCTAACAAGAGCAACGCTGGTGACTATGAAAGGAGATGTTGTGCTAGATAAATTGGTTAAACCAACAAATCCTATCACTGATTATAATACCAGGTTTAGCGGAATCACAAGTGAGATGTTAGATGGGGTGACTACAATTCTTAAAGAAATTCAGGAGGACTTTCTAAAGCTGGTTTACAAGGAGACCGTGCTAGTGGGGCATTCCTTGGAAAATGACTTGTTAGCATTAAAAATCTCCCACAATCTAGTGATCGATACTGCAGTGTTGTACAAGTACCCCCGTGGTAGGTCTTACAAATCTAAACTTCGAGATCTTGCCCAGAAATTTCTTTCTAAAGAGATACAGCAGTCAGGGCTTGGCCATGACAGTATTGAAGATGCAAGAGCTGCTATGGACCTGGCACTTTTAAAGATTAGACATGGACCTGACTTTGGTACAGCACCATCACTGGTACGGAAAAGGTTCCTAACTGTTTTGAGTGAGAGCGGAAAGACCTCCTCTATCATTGATGATATTTCCATTGTGAAGCGTCATGCCTCTGAATTATCCCATGCAGTGCCTGTGTTCTCTGATGACGAAGCTCTTTCAAAAGCTCAAAAGGAGGCAAGGAATGAGAAAGTGCAATTCATCTGGACCCAGTTTTCTGAATTGAATCGTTATTTCACTAAACAAGCAGAGGATGCTGAGAAATTGAATGGAAAAATTGCGGAGTTGATATCCTTGCTTACATGTCATAAGAATTCTGGAAATAAAAAAGGTATTAGATGCAGCTTAACGTCTGAACTAAAGGAAATTCTTATGCGACTGGATACTAGAATACATACCTTGTATGCCTCATTGCCCACTAATGCCATGCTTATTGTCTGCACTGGTCATGGAGATATAGCTACTGTCTCTAGATTAAAGAAAATGCTTATGGATCGTAGTGAAACAACAATGTGCCGTGAGAGCATTGTAAAGGTCTTGGAAGAGCTCCAAGCCCAAGCTGAGGTAGCACTGTGTTTTGTTGGTGTGAAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

570

Amino Acids

63.38

Weight (kDa)

7.15

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_T PF00929 216 - 362 2.3e-13 Exonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AccBSI CCGCTC 2 cut(s) 84, 1173
AccI GTMKAC 2 cut(s) 102, 313
AciI CCGC 4 cut(s) 82, 786, 1173, 1394
AclWI GGATC 2 cut(s) 631, 1614
AcoI YGGCCR 1 cut(s) 1045
AcsI RAATTY 5 cut(s) 163, 834, 1010, 1426, 1479
AcuI CTGAAG 2 cut(s) 225, 603
AfaI GTAC 5 cut(s) 299, 956, 962, 1123, 1140
AfiI CCNNNNNNNGG 4 cut(s) 283, 972, 1118, 1675
AflII CTTAAG 1 cut(s) 320
AflIII ACRYGT 1 cut(s) 1415
AgsI TTSAA 7 cut(s) 179, 563, 583, 1061, 1275, 1339, 1381
AjnI CCWGG 5 cut(s) 277, 468, 589, 776, 1083
Alw21I GWGCWC 2 cut(s) 56, 1662
Alw26I GTCTC 3 cut(s) 332, 863, 1585
AlwI GGATC 2 cut(s) 631, 1614
AlwNI CAGNNNCTG 1 cut(s) 1247
AoxI GGCC 4 cut(s) 106, 353, 612, 1045
ApeKI GCWGC 4 cut(s) 60, 290, 1073, 1455
ApoI RAATTY 5 cut(s) 163, 834, 1010, 1426, 1479
Asp700I GAANNNNTTC 1 cut(s) 1148
AspS9I GGNCC 6 cut(s) 107, 502, 613, 1081, 1109, 1320
AsuHPI GGTGA 4 cut(s) 139, 199, 718, 826
AvaII GGWCC 4 cut(s) 502, 1081, 1109, 1320
BaeI ACNNNNGTAYC 4 cut(s) 933, 966, 1019, 1052
BalI TGGCCA 1 cut(s) 1047
BanII GRGCYC 2 cut(s) 56, 1662
BbsI GAAGAC 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 56, 1662
BbvCI CCTCAGC 1 cut(s) 1674
BbvI GCAGC 4 cut(s) 72, 302, 1060, 1467
BccI CCATC 4 cut(s) 226, 377, 803, 1138
BceAI ACGGC 2 cut(s) 121, 1614
BciT130I CCWGG 5 cut(s) 279, 470, 591, 778, 1085
BciVI GTATCC 1 cut(s) 1489
BcoDI GTCTC 3 cut(s) 332, 863, 1585
BfaI CTAG 5 cut(s) 731, 878, 932, 1500, 1584
BfmI CTRYAG 1 cut(s) 945
BfrI CTTAAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 1489
BglII AGATCT 2 cut(s) 514, 997
BisI GCNGC 4 cut(s) 61, 291, 1074, 1456
BlsI GCNGC 4 cut(s) 62, 292, 1075, 1457
Bme1390I CCNGG 5 cut(s) 279, 470, 591, 778, 1085
Bme18I GGWCC 4 cut(s) 502, 1081, 1109, 1320
BmgT120I GGNCC 6 cut(s) 107, 502, 613, 1081, 1109, 1320
BmiI GGNNCC 3 cut(s) 615, 1151, 1322
BmrFI CCNGG 5 cut(s) 279, 470, 591, 778, 1085
BmrI ACTGGG 1 cut(s) 1318
BmsI GCATC 7 cut(s) 277, 378, 391, 482, 1054, 1357, 1442
BmuI ACTGGG 1 cut(s) 1318
BpiI GAAGAC 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 1674
BpuEI CTTGAG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 665
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 4 cut(s) 277, 350, 891, 967
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 4 cut(s) 283, 972, 1118, 1675
Bse1I ACTGG 7 cut(s) 189, 288, 356, 1140, 1324, 1497, 1561
Bse3DI GCAATG 1 cut(s) 1523
Bse8I GATNNNNATC 1 cut(s) 665
BseBI CCWGG 5 cut(s) 279, 470, 591, 778, 1085
BseCI ATCGAT 1 cut(s) 939
BseDI CCNNGG 4 cut(s) 277, 350, 891, 967
BseGI GGATG 5 cut(s) 292, 393, 473, 626, 1372
BseJI GATNNNNATC 1 cut(s) 665
BseLI CCNNNNNNNGG 4 cut(s) 283, 972, 1118, 1675
BseMI GCAATG 1 cut(s) 1523
BseMII CTCAG 4 cut(s) 382, 510, 1362, 1665
BseNI ACTGG 7 cut(s) 189, 288, 356, 1140, 1324, 1497, 1561
BseRI GAGGAG 1 cut(s) 1174
BseXI GCAGC 4 cut(s) 72, 302, 1060, 1467
BsgI GTGCAG 1 cut(s) 1537
BshFI GGCC 4 cut(s) 108, 355, 614, 1047
BshVI ATCGAT 1 cut(s) 939
BsiHKAI GWGCWC 2 cut(s) 56, 1662
BsiSI CCGG 1 cut(s) 611
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 4 cut(s) 283, 972, 1118, 1675
BsmAI GTCTC 3 cut(s) 332, 863, 1585
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 4 cut(s) 108, 355, 614, 1047
Bso31I GGTCTC 1 cut(s) 863
Bsp1286I GDGCHC 2 cut(s) 56, 1662
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
BspACI CCGC 4 cut(s) 82, 786, 1173, 1394
BspANI GGCC 4 cut(s) 108, 355, 614, 1047
BspCNI CTCAG 4 cut(s) 381, 509, 1363, 1666
BspDI ATCGAT 1 cut(s) 939
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 3 cut(s) 615, 1151, 1322
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 2 cut(s) 631, 1614
BspQI GCTCTTC 1 cut(s) 1650
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 863
BsrBI CCGCTC 2 cut(s) 84, 1173
BsrDI GCAATG 1 cut(s) 1523
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 7 cut(s) 189, 288, 356, 1140, 1324, 1497, 1561
BssECI CCNNGG 4 cut(s) 277, 350, 891, 967
BssMI GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
BssT1I CCWWGG 2 cut(s) 350, 891
Bst2UI CCWGG 5 cut(s) 279, 470, 591, 778, 1085
Bst4CI ACNGT 6 cut(s) 454, 874, 1055, 1159, 1579, 1686
Bst6I CTCTTC 3 cut(s) 612, 1650, 1697
BstAFI CTTAAG 1 cut(s) 320
BstAPI GCANNNNNTGC 2 cut(s) 1073, 1367
BstAUI TGTACA 1 cut(s) 954
BstC8I GCNNGC 3 cut(s) 201, 347, 645
BstDEI CTNAG 5 cut(s) 301, 368, 496, 1371, 1674
BstDSI CCRYGG 1 cut(s) 967
BstF5I GGATG 5 cut(s) 292, 393, 473, 626, 1372
BstKTI GATC 6 cut(s) 490, 517, 626, 939, 1000, 1609
BstMAI GTCTC 3 cut(s) 332, 863, 1585
BstMBI GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
BstMWI GCNNNNNNNGC 7 cut(s) 60, 883, 1039, 1073, 1367, 1635, 1679
BstNI CCWGG 5 cut(s) 279, 470, 591, 778, 1085
BstNSI RCATGY 1 cut(s) 1419
BstSCI CCNGG 5 cut(s) 277, 468, 589, 776, 1083
BstSFI CTRYAG 1 cut(s) 945
BstV1I GCAGC 4 cut(s) 72, 302, 1060, 1467
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 2 cut(s) 514, 997
BstYI RGATCY 2 cut(s) 514, 997
Bsu15I ATCGAT 1 cut(s) 939
BsuI GTATCC 1 cut(s) 1489
BsuRI GGCC 4 cut(s) 108, 355, 614, 1047
BsuTUI ATCGAT 1 cut(s) 939
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 5 cut(s) 292, 393, 473, 626, 1372
BtsI GCAGTG 2 cut(s) 954, 1248
BtsIMutI CAGTG 7 cut(s) 504, 762, 954, 1133, 1248, 1554, 1682
Cac8I GCNNGC 3 cut(s) 201, 347, 645
CaiI CAGNNNCTG 1 cut(s) 1247
CciI TCATGA 1 cut(s) 507
Cfr13I GGNCC 6 cut(s) 107, 502, 613, 1081, 1109, 1320
ClaI ATCGAT 1 cut(s) 939
CseI GACGC 2 cut(s) 148, 1205
CsiI ACCWGGT 1 cut(s) 776
Csp6I GTAC 5 cut(s) 298, 955, 961, 1122, 1139
CviQI GTAC 5 cut(s) 298, 955, 961, 1122, 1139
DdeI CTNAG 5 cut(s) 301, 368, 496, 1371, 1674
DpnI GATC 6 cut(s) 489, 516, 625, 938, 999, 1608
DpnII GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 1045
Eam1104I CTCTTC 3 cut(s) 612, 1650, 1697
EarI CTCTTC 3 cut(s) 612, 1650, 1697
Ecl136II GAGCTC 2 cut(s) 54, 1660
Eco130I CCWWGG 2 cut(s) 350, 891
Eco24I GRGCYC 2 cut(s) 56, 1662
Eco31I GGTCTC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 1404
Eco47I GGWCC 4 cut(s) 502, 1081, 1109, 1320
Eco53kI GAGCTC 2 cut(s) 54, 1660
Eco57I CTGAAG 2 cut(s) 225, 603
EcoICRI GAGCTC 2 cut(s) 54, 1660
EcoRI GAATTC 1 cut(s) 1426
EcoRII CCWGG 5 cut(s) 277, 468, 589, 776, 1083
EcoRV GATATC 1 cut(s) 1404
EcoT14I CCWWGG 2 cut(s) 350, 891
EcoT38I GRGCYC 2 cut(s) 56, 1662
ErhI CCWWGG 2 cut(s) 350, 891
FaqI GGGAC 1 cut(s) 260
FblI GTMKAC 2 cut(s) 102, 313
Fnu4HI GCNGC 4 cut(s) 61, 291, 1074, 1456
FokI GGATG 5 cut(s) 299, 400, 460, 613, 1379
FriOI GRGCYC 2 cut(s) 56, 1662
Fsp4HI GCNGC 4 cut(s) 61, 291, 1074, 1456
FspBI CTAG 5 cut(s) 731, 878, 932, 1500, 1584
GluI GCNGC 4 cut(s) 61, 291, 1074, 1456
HaeIII GGCC 4 cut(s) 108, 355, 614, 1047
HapII CCGG 1 cut(s) 611
HgaI GACGC 2 cut(s) 148, 1205
HincII GTYRAC 1 cut(s) 314
HindII GTYRAC 1 cut(s) 314
HinfI GANTC 3 cut(s) 325, 789, 1339
HpaII CCGG 1 cut(s) 611
HphI GGTGA 4 cut(s) 139, 199, 718, 826
Hpy166II GTNNAC 4 cut(s) 103, 314, 502, 862
Hpy188I TCNGA 7 cut(s) 40, 162, 382, 1228, 1258, 1333, 1468
Hpy188III TCNNGA 9 cut(s) 179, 409, 508, 621, 839, 995, 1318, 1431, 1584
Hpy8I GTNNAC 4 cut(s) 103, 314, 502, 862
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 15, 200, 627
HpyCH4III ACNGT 6 cut(s) 454, 874, 1055, 1159, 1579, 1686
HpyCH4IV ACGT 1 cut(s) 1463
HpyF10VI GCNNNNNNNGC 7 cut(s) 60, 883, 1039, 1073, 1367, 1635, 1679
HpyF3I CTNAG 5 cut(s) 301, 368, 496, 1371, 1674
HpySE526I ACGT 1 cut(s) 1463
Kzo9I GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
LguI GCTCTTC 1 cut(s) 1650
LmnI GCTCC 2 cut(s) 89, 1665
Lsp1109I GCAGC 4 cut(s) 72, 302, 1060, 1467
LweI GCATC 7 cut(s) 277, 378, 391, 482, 1054, 1357, 1442
MabI ACCWGGT 1 cut(s) 776
MaeI CTAG 5 cut(s) 731, 878, 932, 1500, 1584
MaeII ACGT 1 cut(s) 1463
MaeIII GTNAC 3 cut(s) 187, 706, 814
MalI GATC 6 cut(s) 489, 516, 625, 938, 999, 1608
MbiI CCGCTC 2 cut(s) 84, 1173
MboI GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
MboII GAAGA 6 cut(s) 56, 449, 575, 599, 1073, 1667
MflI RGATCY 2 cut(s) 514, 997
MhlI GDGCHC 2 cut(s) 56, 1662
MlsI TGGCCA 1 cut(s) 1047
MluNI TGGCCA 1 cut(s) 1047
MlyI GAGTC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 1047
MroXI GAANNNNTTC 1 cut(s) 1148
MscI TGGCCA 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 1047
MspA1I CMGCKG 1 cut(s) 372
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 1 cut(s) 611
MspR9I CCNGG 5 cut(s) 279, 470, 591, 778, 1085
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 5 cut(s) 279, 470, 591, 778, 1085
MwoI GCNNNNNNNGC 7 cut(s) 60, 883, 1039, 1073, 1367, 1635, 1679
NdeII GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
NlaIV GGNNCC 3 cut(s) 615, 1151, 1322
NmuCI GTSAC 3 cut(s) 187, 706, 814
NspI RCATGY 1 cut(s) 1419
PagI TCATGA 1 cut(s) 507
PciI ACATGT 1 cut(s) 1415
PciSI GCTCTTC 1 cut(s) 1650
PctI GAATGC 1 cut(s) 886
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 2 cut(s) 789, 1339
PkrI GCNGC 4 cut(s) 62, 292, 1075, 1457
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PscI ACATGT 1 cut(s) 1415
PsiI TTATAA 1 cut(s) 771
Psp124BI GAGCTC 2 cut(s) 56, 1662
Psp6I CCWGG 5 cut(s) 277, 468, 589, 776, 1083
PspGI CCWGG 5 cut(s) 277, 468, 589, 776, 1083
PspN4I GGNNCC 3 cut(s) 615, 1151, 1322
PspPI GGNCC 6 cut(s) 107, 502, 613, 1081, 1109, 1320
PstI CTGCAG 1 cut(s) 949
PstNI CAGNNNCTG 1 cut(s) 1247
PsuI RGATCY 2 cut(s) 514, 997
PvuII CAGCTG 1 cut(s) 372
RsaI GTAC 5 cut(s) 299, 956, 962, 1123, 1140
RsaNI GTAC 5 cut(s) 298, 955, 961, 1122, 1139
SacI GAGCTC 2 cut(s) 56, 1662
SalI GTCGAC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 1650
SatI GCNGC 4 cut(s) 61, 291, 1074, 1456
Sau3AI GATC 6 cut(s) 487, 514, 623, 936, 997, 1606
Sau96I GGNCC 6 cut(s) 107, 502, 613, 1081, 1109, 1320
SchI GAGTC 1 cut(s) 334
ScrFI CCNGG 5 cut(s) 279, 470, 591, 778, 1085
SduI GDGCHC 2 cut(s) 56, 1662
SexAI ACCWGGT 1 cut(s) 776
SfaNI GCATC 7 cut(s) 277, 378, 391, 482, 1054, 1357, 1442
SfcI CTRYAG 1 cut(s) 945
SinI GGWCC 4 cut(s) 502, 1081, 1109, 1320
SmlI CTYRAG 2 cut(s) 55, 320
SmoI CTYRAG 2 cut(s) 55, 320
SsiI CCGC 4 cut(s) 82, 786, 1173, 1394
SspMI CTAG 5 cut(s) 731, 878, 932, 1500, 1584
SstI GAGCTC 2 cut(s) 56, 1662
StyD4I CCNGG 5 cut(s) 277, 468, 589, 776, 1083
StyI CCWWGG 2 cut(s) 350, 891
TaaI ACNGT 6 cut(s) 454, 874, 1055, 1159, 1579, 1686
TaiI ACGT 1 cut(s) 1466
TaqI TCGA 5 cut(s) 24, 96, 313, 939, 994
TatI WGTACW 2 cut(s) 297, 954
TfiI GAWTC 2 cut(s) 789, 1339
TscAI CASTG 7 cut(s) 504, 769, 954, 1140, 1248, 1561, 1689
TseFI GTSAC 3 cut(s) 187, 706, 814
TseI GCWGC 4 cut(s) 60, 290, 1073, 1455
Tsp45I GTSAC 3 cut(s) 187, 706, 814
TspDTI ATGAA 4 cut(s) 202, 524, 728, 1303
TspGWI ACGGA 1 cut(s) 1156
TspRI CASTG 7 cut(s) 504, 769, 954, 1140, 1248, 1561, 1689
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 4 cut(s) 502, 1081, 1109, 1320
XapI RAATTY 5 cut(s) 163, 834, 1010, 1426, 1479
XbaI TCTAGA 1 cut(s) 1583
XceI RCATGY 1 cut(s) 1419
XmiI GTMKAC 2 cut(s) 102, 313
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 5 cut(s) 731, 878, 932, 1500, 1584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.