Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Forward (+)

43138054 .. 43143127

Gene Structure 5074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCGCAACCAACCACTTCGAAGGAGAGGAGCTACTAGGGTAGCTTTGGTTGAAATCAGTTATGGAAGATCAAGTCAAGGACCTGGTCGGCAAGGTCAACCGAGTGTAGAGTGGGTAAGACTCCTGCGGAACTATTTGAGGTCATCTTGTGATGACTTGTACTGGTCAGCTCCGGTCAACTTGAGTTCACAACTGGGCATGTATAAGCACGACAAGGCCATCCCTTTTCCAAGCCGCTGGTGTTGGTGTGGAATCGGAGCTGTGGTGGATTTTGGAGGAGTGTACTGCTGGAACAGTTTGGTGGTGTCAATGATTGGAGTTAGAAGGAGCAATGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGATTAGAGAGCCCCGTCTCTTCTCACTGGTGATAGTTAGTCATGAGCTATCCGAAGACAAATGCGGAGATGAAGATGAAGATAAAGATGGTGCCGGTAGCGGAGAGCCTCAATTAATCGAATCTATGATTTACCAGAGGAGTGAAGAGAAGCAGGATTTGGAGTTGGCATTGGGATTTGAATTGAAAAGAGTGAATGCGCTGGACGGAGAACAGGAAGTGGAGGAGTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006457 GO:0008150 GO:0009987 GO:0030424 GO:0030425 GO:0030544 GO:0031072 GO:0036477 GO:0042995 GO:0043005 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044463 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051087 GO:0051128 GO:0051129 GO:0065007 GO:0070628 GO:0070852 GO:0090083 GO:0090084 GO:0097447 GO:0097458 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

211

Amino Acids

23.78

Weight (kDa)

5.03

Isoelectric Point (pI)

72.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	491
AciI	CCGC	6 cut(s)	127, 235, 356, 399, 465, 501
AfaI	GTAC	2 cut(s)	161, 284
AgsI	TTSAA	3 cut(s)	53, 581, 586
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	4 cut(s)	360, 392, 542, 574
AluBI	AGCT	5 cut(s)	32, 44, 170, 260, 448
AluI	AGCT	5 cut(s)	32, 44, 170, 260, 448
Alw26I	GTCTC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	396
AseI	ATTAAT	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	6, 601
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	3 cut(s)	347, 377, 442
AsuII	TTCGAA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	397, 462
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	3 cut(s)	227, 356, 482
BciT130I	CCWGG	1 cut(s)	84
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	2 cut(s)	235, 397
BlsI	GCNGC	2 cut(s)	236, 398
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	203
BpiI	GAAGAC	2 cut(s)	397, 462
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 319, 349
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	3 cut(s)	167, 198, 432
Bse3DI	GCAATG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	3 cut(s)	167, 198, 432
BseRI	GAGGAG	3 cut(s)	42, 291, 553
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	491
BsiSI	CCGG	2 cut(s)	173, 495
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	68, 337
BspACI	CCGC	6 cut(s)	127, 235, 356, 399, 465, 501
BspANI	GGCC	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	167, 198, 432
BssAI	RCCGGY	1 cut(s)	494
BssMI	GATC	2 cut(s)	68, 337
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	425, 540
BstBI	TTCGAA	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	6, 601
BstKTI	GATC	2 cut(s)	71, 340
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	68, 337
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	2 cut(s)	397, 462
BstXI	CCANNNNNNTGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	2 cut(s)	6, 601
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	80
CseI	GACGC	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	160, 283
CviAII	CATG	2 cut(s)	199, 443
CviQI	GTAC	2 cut(s)	160, 283
DpnI	GATC	2 cut(s)	70, 339
DpnII	GATC	2 cut(s)	68, 337
Eam1104I	CTCTTC	2 cut(s)	425, 540
EarI	CTCTTC	2 cut(s)	425, 540
EciI	GGCGGA	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	2 cut(s)	202, 446
FaiI	YATR	5 cut(s)	63, 200, 204, 444, 527
FatI	CATG	2 cut(s)	198, 442
FauI	CCCGC	1 cut(s)	392
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	235, 397
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	2 cut(s)	235, 397
FspBI	CTAG	1 cut(s)	36
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 600
GluI	GCNGC	2 cut(s)	235, 397
HaeIII	GGCC	1 cut(s)	218
HapII	CCGG	2 cut(s)	173, 495
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	6, 601
Hin1II	CATG	2 cut(s)	202, 446
Hin6I	GCGC	2 cut(s)	4, 599
HinP1I	GCGC	2 cut(s)	4, 599
HincII	GTYRAC	2 cut(s)	98, 178
HindII	GTYRAC	2 cut(s)	98, 178
HinfI	GANTC	5 cut(s)	120, 252, 368, 521, 626
HpaII	CCGG	2 cut(s)	173, 495
HphI	GGTGA	3 cut(s)	347, 377, 442
Hpy166II	GTNNAC	4 cut(s)	98, 178, 188, 283
Hpy188I	TCNGA	2 cut(s)	257, 454
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	4 cut(s)	98, 178, 188, 283
HpyAV	CCTTC	2 cut(s)	15, 318
HpyCH4III	ACNGT	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	202, 446
HspAI	GCGC	2 cut(s)	4, 599
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	68, 337
LmnI	GCTCC	4 cut(s)	29, 175, 257, 327
Lsp1109I	GCAGC	1 cut(s)	408
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	1 cut(s)	36
MalI	GATC	2 cut(s)	70, 339
MboI	GATC	2 cut(s)	68, 337
MboII	GAAGA	7 cut(s)	78, 402, 412, 467, 485, 491, 557
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	2 cut(s)	512, 581
MlyI	GAGTC	2 cut(s)	114, 635
MnlI	CCTC	6 cut(s)	20, 132, 269, 519, 531, 616
MseI	TTAA	2 cut(s)	386, 515
MspA1I	CMGCKG	2 cut(s)	237, 399
MspI	CCGG	2 cut(s)	173, 495
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	601
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	68, 337
NlaIII	CATG	2 cut(s)	202, 446
NlaIV	GGNNCC	1 cut(s)	493
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	19
PagI	TCATGA	1 cut(s)	442
PctI	GAATGC	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	252, 368, 521
PflFI	GACNNNGTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	236, 398
PleI	GAGTC	2 cut(s)	114, 634
PpsI	GAGTC	2 cut(s)	114, 634
PpuMI	RGGWCCY	1 cut(s)	80
PshBI	ATTAAT	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	84
RsaI	GTAC	2 cut(s)	161, 284
RsaNI	GTAC	2 cut(s)	160, 283
SaqAI	TTAA	2 cut(s)	386, 515
SatI	GCNGC	2 cut(s)	235, 397
Sau3AI	GATC	2 cut(s)	68, 337
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	114, 635
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	8 cut(s)	34, 46, 85, 97, 143, 172, 262, 450
SexAI	ACCWGGT	1 cut(s)	82
SfuI	TTCGAA	1 cut(s)	19
SinI	GGWCC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	512, 581
SsiI	CCGC	6 cut(s)	127, 235, 356, 399, 465, 501
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	19, 519
TasI	AATT	2 cut(s)	512, 581
TatI	WGTACW	2 cut(s)	159, 282
TauI	GCSGC	1 cut(s)	237
TfiI	GAWTC	3 cut(s)	252, 368, 521
Tru1I	TTAA	2 cut(s)	386, 515
Tru9I	TTAA	2 cut(s)	386, 515
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	1 cut(s)	396
TspDTI	ATGAA	2 cut(s)	486, 492
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	1 cut(s)	432
Tth111I	GACNNNGTC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	515
XceI	RCATGY	1 cut(s)	202
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.