Rroxscaffold_6G00389120

Small RNA degrading nuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003406
Physical Location & Seq
Forward (+)
2492636 .. 2493026
391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389120.1

Sequence Viewer

Length: 315 bp
ATGTTAGATGGGGTGACTACAAGCCTCAAAGATATTCGGGAGGACTTCTTAAAGCTGGTTTACAAAGAGACCGTCTTAGTTGGCCATTCGTTGGAGAATGACTTATTAGCATTGAAAATTGCTCACAATCTCGTGATTGATACAACAAAGATCCAGCTGTCGGGGAATGGTCATGATAGTATCGAAGATGCAAGAGCTGCTATGGAACTGGCTCTTTTAAAGATTAGACATGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTGAGAAGACGCAGCGGGATTCGAGGTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RNase_T

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

5.29

Isoelectric Point (pI)

23.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 2 cut(s) 254, 297
AclWI GGATC 1 cut(s) 145
AcoI YGGCCR 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 91, 160
AgsI TTSAA 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AluBI AGCT 3 cut(s) 55, 157, 197
AluI AGCT 3 cut(s) 55, 157, 197
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 197, 294
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AsuHPI GGTGA 3 cut(s) 25, 245, 275
BalI TGGCCA 1 cut(s) 84
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 184, 306
BccI CCATC 2 cut(s) 2, 254
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 62
BisI GCNGC 2 cut(s) 198, 295
BlsI GCNGC 2 cut(s) 199, 296
BmsI GCATC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 160
Bse1I ACTGG 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 91, 160
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 184, 306
BshFI GGCC 1 cut(s) 84
BslI CCNNNNNNNGG 2 cut(s) 91, 160
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 150, 235
BspACI CCGC 2 cut(s) 254, 297
BspANI GGCC 1 cut(s) 84
BspHI TCATGA 1 cut(s) 172
BspPI GGATC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 213
BssMI GATC 2 cut(s) 150, 235
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 76
BstKTI GATC 2 cut(s) 153, 238
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 150, 235
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 184, 306
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 84
CciI TCATGA 1 cut(s) 172
CseI GACGC 1 cut(s) 300
CviAII CATG 2 cut(s) 173, 230
CviJI RGCY 7 cut(s) 24, 55, 84, 157, 197, 212, 280
CviKI_1 RGCY 7 cut(s) 24, 55, 84, 157, 197, 212, 280
DdeI CTNAG 1 cut(s) 76
DpnI GATC 2 cut(s) 152, 237
DpnII GATC 2 cut(s) 150, 235
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 82
EciI GGCGGA 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 176, 233
FaiI YATR 3 cut(s) 174, 203, 231
FatI CATG 2 cut(s) 172, 229
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 198, 295
Fsp4HI GCNGC 2 cut(s) 198, 295
GluI GCNGC 2 cut(s) 198, 295
HaeIII GGCC 1 cut(s) 84
HgaI GACGC 1 cut(s) 300
Hin1II CATG 2 cut(s) 176, 233
HinfI GANTC 2 cut(s) 266, 301
HphI GGTGA 3 cut(s) 25, 245, 275
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 38, 133, 173
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 2 cut(s) 176, 233
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 150, 235
LpnPI CCDG 3 cut(s) 41, 167, 194
Lsp1109I GCAGC 2 cut(s) 184, 306
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 152, 237
MboI GATC 2 cut(s) 150, 235
MboII GAAGA 2 cut(s) 197, 300
MflI RGATCY 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 34, 35, 299
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 2 cut(s) 50, 218
Msp20I TGGCCA 1 cut(s) 84
MspA1I CMGCKG 2 cut(s) 157, 297
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 2 cut(s) 150, 235
NlaIII CATG 2 cut(s) 176, 233
NmuCI GTSAC 1 cut(s) 13
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 2 cut(s) 266, 301
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 2 cut(s) 199, 296
PsuI RGATCY 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 50, 218
SatI GCNGC 2 cut(s) 198, 295
Sau3AI GATC 2 cut(s) 150, 235
SetI ASST 4 cut(s) 57, 159, 199, 310
SfaNI GCATC 1 cut(s) 178
Sse9I AATT 1 cut(s) 117
SsiI CCGC 2 cut(s) 254, 297
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 183, 304
TasI AATT 1 cut(s) 117
TfiI GAWTC 2 cut(s) 266, 301
Tru1I TTAA 2 cut(s) 50, 218
Tru9I TTAA 2 cut(s) 50, 218
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 197, 294
Tsp45I GTSAC 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.