Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Reverse (-)

24232332 .. 24232927

Gene Structure 596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCACAAAGTGATGAGGATGAGCAACTTCAAGCATGGTTTGCATCAGCTTTCGATCGAAATCTCTCCATGGGAATCTCAAAATTTCGAGTACCACCAAGGAAACCTCCAGAGCGGACAAAAGATGGAGTTGCTTCTAATGAAGATAGTTTTACCGATGTGCCAAGTGGTTCGTATCTGGTATCTAAATATGAAGATAAAGTATCACATGAAAATATATTGGGCCGTGATGTAAAAAGTGTTGCTGAGAAAGATTTGGTGTCTCCGGTAGTTGAGAATGTTTCGTGTGCCTTTATCAAGAAGTCAAGTGTAATTGATGGGGCAATTGTGGAGCGCAACGAAATCATTAAGTCAAAAGAAGAGGGAAATCAAAGCTGTGCAGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGATTAGAGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006355 GO:0006357 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016591 GO:0019208 GO:0019212 GO:0019219 GO:0019220 GO:0019222 GO:0030234 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035303 GO:0035305 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044092 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051252 GO:0051253 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0080090 GO:0098772 GO:0140110 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

154

Amino Acids

16.99

Weight (kDa)

4.87

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	3 cut(s)	115, 404, 447
AcsI	RAATTY	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	2 cut(s)	50, 375
AluI	AGCT	2 cut(s)	50, 375
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	2 cut(s)	395, 425
BbsI	GAAGAC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	456
BccI	CCATC	3 cut(s)	119, 311, 404
BceAI	ACGGC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	53
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	69, 98
BsaWI	WCCGGW	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	69, 98
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	55, 385
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	3 cut(s)	115, 404, 447
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	69, 98
BssMI	GATC	2 cut(s)	55, 385
BssT1I	CCWWGG	2 cut(s)	69, 98
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	58, 388
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	55, 385
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	371
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	36, 70, 209
CviJI	RGCY	4 cut(s)	50, 225, 375, 430
CviKI_1	RGCY	4 cut(s)	50, 225, 375, 430
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	57, 387
DpnII	GATC	2 cut(s)	55, 385
DraIII	CACNNNGTG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	69, 98
EcoT14I	CCWWGG	2 cut(s)	69, 98
ErhI	CCWWGG	2 cut(s)	69, 98
FaeI	CATG	3 cut(s)	39, 73, 212
FaiI	YATR	5 cut(s)	37, 71, 192, 210, 218
FatI	CATG	3 cut(s)	35, 69, 208
FauI	CCCGC	1 cut(s)	440
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	445
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	450
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	39, 73, 212
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	75, 416
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	2 cut(s)	395, 425
Hpy188III	TCNNGA	2 cut(s)	110, 298
HpyCH4V	TGCA	2 cut(s)	44, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	39, 73, 212
HspAI	GCGC	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	55, 385
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	4 cut(s)	123, 164, 279, 366
Lsp1109I	GCAGC	1 cut(s)	456
LweI	GCATC	1 cut(s)	53
MalI	GATC	2 cut(s)	57, 387
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	2 cut(s)	55, 385
MboII	GAAGA	4 cut(s)	155, 206, 371, 450
MfeI	CAATTG	1 cut(s)	324
MluCI	AATT	3 cut(s)	83, 312, 324
MnlI	CCTC	4 cut(s)	10, 117, 355, 449
MseI	TTAA	2 cut(s)	348, 434
MspA1I	CMGCKG	1 cut(s)	447
MspI	CCGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	55, 385
NlaIII	CATG	3 cut(s)	39, 73, 212
PaqCI	CACCTGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	75, 416
PkrI	GCNGC	1 cut(s)	446
Ple19I	CGATCG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	348, 434
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	55, 385
Sau96I	GGNCC	1 cut(s)	223
SetI	ASST	5 cut(s)	52, 109, 377, 385, 460
SfaNI	GCATC	1 cut(s)	53
Sse9I	AATT	3 cut(s)	83, 312, 324
SsiI	CCGC	3 cut(s)	115, 404, 447
StyI	CCWWGG	2 cut(s)	69, 98
TaqI	TCGA	3 cut(s)	54, 58, 88
TasI	AATT	3 cut(s)	83, 312, 324
TfiI	GAWTC	2 cut(s)	75, 416
Tru1I	TTAA	2 cut(s)	348, 434
Tru9I	TTAA	2 cut(s)	348, 434
TseI	GCWGC	1 cut(s)	444
TspDTI	ATGAA	3 cut(s)	156, 207, 225
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.