Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25800 AT5G25800 |
| fragaria_vesca | FvH4_2g15020 FvH4_2g15020 FvH4_4g14244 |
| malus_domestica | MD05G1011300.v1.1 MD10G1011100.v1.1 |
| prunus_persica | Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 |
| pyrus_communis | pycom05g00660 pycom10g00710 |
| rosa_chinensis | RchiOBHm_Chr6g0277571 |
| rosa_laevigata | RLG00000013291 |
| rosa_multiflora | Rmu_co8201914.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200 |
| rosa_rugosa | Rorug06G0109700 |
| rosa_samantha | Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000 |
| rosa_wichuraiana | Rw6G019280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 771 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 892 |
| AccBSI | CCGCTC | 1 cut(s) | 1173 |
| AccI | GTMKAC | 2 cut(s) | 102, 1517 |
| AciI | CCGC | 3 cut(s) | 1173, 1185, 1530 |
| AclWI | GGATC | 2 cut(s) | 631, 1614 |
| AcoI | YGGCCR | 1 cut(s) | 1045 |
| AcsI | RAATTY | 3 cut(s) | 163, 1389, 1479 |
| AcuI | CTGAAG | 4 cut(s) | 225, 341, 603, 872 |
| AcyI | GRCGYC | 2 cut(s) | 473, 1368 |
| AfaI | GTAC | 5 cut(s) | 445, 956, 962, 1123, 1510 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 283, 892, 972, 1118, 1675 |
| AflII | CTTAAG | 1 cut(s) | 827 |
| AgsI | TTSAA | 5 cut(s) | 179, 563, 583, 1061, 1339 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 822 |
| AhlI | ACTAGT | 2 cut(s) | 184, 794 |
| AjiI | CACGTC | 1 cut(s) | 192 |
| AjnI | CCWGG | 6 cut(s) | 277, 282, 468, 589, 776, 1083 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1586, 1618 |
| Alw21I | GWGCWC | 2 cut(s) | 56, 1662 |
| Alw26I | GTCTC | 4 cut(s) | 332, 633, 863, 1585 |
| AlwI | GGATC | 2 cut(s) | 631, 1614 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1247 |
| AoxI | GGCC | 6 cut(s) | 106, 280, 353, 612, 883, 1045 |
| ApeKI | GCWGC | 4 cut(s) | 60, 290, 1452, 1455 |
| ApoI | RAATTY | 3 cut(s) | 163, 1389, 1479 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1390 |
| AspS9I | GGNCC | 6 cut(s) | 107, 613, 883, 1081, 1109, 1320 |
| AsuC2I | CCSGG | 3 cut(s) | 38, 1006, 1631 |
| AsuHPI | GGTGA | 2 cut(s) | 718, 826 |
| AvaII | GGWCC | 3 cut(s) | 1081, 1109, 1320 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 933, 966, 1019, 1052 |
| BalI | TGGCCA | 1 cut(s) | 1047 |
| BanII | GRGCYC | 2 cut(s) | 56, 1662 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 845, 877 |
| BbsI | GAAGAC | 2 cut(s) | 570, 1371 |
| Bbv12I | GWGCWC | 2 cut(s) | 56, 1662 |
| BbvCI | CCTCAGC | 1 cut(s) | 1674 |
| BbvI | GCAGC | 4 cut(s) | 72, 302, 1439, 1467 |
| BccI | CCATC | 4 cut(s) | 377, 881, 1138, 1196 |
| BceAI | ACGGC | 1 cut(s) | 121 |
| BciT130I | CCWGG | 6 cut(s) | 279, 284, 470, 591, 778, 1085 |
| BciVI | GTATCC | 1 cut(s) | 1489 |
| BcnI | CCSGG | 3 cut(s) | 38, 1006, 1631 |
| BcoDI | GTCTC | 4 cut(s) | 332, 633, 863, 1585 |
| BcuI | ACTAGT | 2 cut(s) | 184, 794 |
| BfaI | CTAG | 6 cut(s) | 185, 731, 795, 932, 1500, 1584 |
| BfmI | CTRYAG | 2 cut(s) | 945, 1453 |
| BfrI | CTTAAG | 1 cut(s) | 827 |
| BfuI | GTATCC | 1 cut(s) | 1489 |
| BglII | AGATCT | 1 cut(s) | 997 |
| BisI | GCNGC | 4 cut(s) | 61, 291, 1453, 1456 |
| BlsI | GCNGC | 4 cut(s) | 62, 292, 1454, 1457 |
| BmcAI | AGTACT | 1 cut(s) | 445 |
| Bme1390I | CCNGG | 9 cut(s) | 38, 279, 284, 470, 591, 778, 1006, 1085, 1631 |
| Bme18I | GGWCC | 3 cut(s) | 1081, 1109, 1320 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 822 |
| BmgBI | CACGTC | 1 cut(s) | 192 |
| BmgT120I | GGNCC | 6 cut(s) | 107, 613, 883, 1081, 1109, 1320 |
| BmiI | GGNNCC | 3 cut(s) | 615, 1151, 1322 |
| BmrFI | CCNGG | 9 cut(s) | 38, 279, 284, 470, 591, 778, 1006, 1085, 1631 |
| BmrI | ACTGGG | 1 cut(s) | 1318 |
| BmsI | GCATC | 3 cut(s) | 378, 391, 1054 |
| BmuI | ACTGGG | 1 cut(s) | 1318 |
| BpiI | GAAGAC | 2 cut(s) | 570, 1371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1674 |
| BpuEI | CTTGAG | 1 cut(s) | 40 |
| BpuMI | CCSGG | 3 cut(s) | 38, 1006, 1631 |
| Bsa29I | ATCGAT | 1 cut(s) | 939 |
| BsaAI | YACGTR | 1 cut(s) | 1508 |
| BsaHI | GRCGYC | 2 cut(s) | 473, 1368 |
| BsaI | GGTCTC | 1 cut(s) | 863 |
| BsaJI | CCNNGG | 5 cut(s) | 36, 277, 350, 967, 1077 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 283, 892, 972, 1118, 1675 |
| Bse1I | ACTGG | 5 cut(s) | 356, 708, 1324, 1497, 1561 |
| Bse3DI | GCAATG | 2 cut(s) | 1523, 1629 |
| BseBI | CCWGG | 6 cut(s) | 279, 284, 470, 591, 778, 1085 |
| BseCI | ATCGAT | 1 cut(s) | 939 |
| BseDI | CCNNGG | 5 cut(s) | 36, 277, 350, 967, 1077 |
| BseGI | GGATG | 2 cut(s) | 393, 1181 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 283, 892, 972, 1118, 1675 |
| BseMI | GCAATG | 2 cut(s) | 1523, 1629 |
| BseMII | CTCAG | 3 cut(s) | 382, 1386, 1665 |
| BseNI | ACTGG | 5 cut(s) | 356, 708, 1324, 1497, 1561 |
| BseXI | GCAGC | 4 cut(s) | 72, 302, 1439, 1467 |
| BsgI | GTGCAG | 1 cut(s) | 1537 |
| BshFI | GGCC | 6 cut(s) | 108, 282, 355, 614, 885, 1047 |
| BshVI | ATCGAT | 1 cut(s) | 939 |
| BsiHKAI | GWGCWC | 2 cut(s) | 56, 1662 |
| BsiSI | CCGG | 4 cut(s) | 38, 611, 1006, 1630 |
| BslFI | GGGAC | 1 cut(s) | 260 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 283, 892, 972, 1118, 1675 |
| BsmAI | GTCTC | 4 cut(s) | 332, 633, 863, 1585 |
| BsmBI | CGTCTC | 1 cut(s) | 633 |
| BsmFI | GGGAC | 1 cut(s) | 260 |
| BsnI | GGCC | 6 cut(s) | 108, 282, 355, 614, 885, 1047 |
| Bso31I | GGTCTC | 1 cut(s) | 863 |
| Bsp1286I | GDGCHC | 2 cut(s) | 56, 1662 |
| Bsp1407I | TGTACA | 1 cut(s) | 954 |
| Bsp143I | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| Bsp19I | CCATGG | 1 cut(s) | 1077 |
| BspACI | CCGC | 3 cut(s) | 1173, 1185, 1530 |
| BspANI | GGCC | 6 cut(s) | 108, 282, 355, 614, 885, 1047 |
| BspCNI | CTCAG | 3 cut(s) | 381, 1387, 1666 |
| BspDI | ATCGAT | 1 cut(s) | 939 |
| BspHI | TCATGA | 1 cut(s) | 507 |
| BspLI | GGNNCC | 3 cut(s) | 615, 1151, 1322 |
| BspMAI | CTGCAG | 2 cut(s) | 949, 1457 |
| BspPI | GGATC | 2 cut(s) | 631, 1614 |
| BspQI | GCTCTTC | 2 cut(s) | 1650, 1697 |
| BspTI | CTTAAG | 1 cut(s) | 827 |
| BspTNI | GGTCTC | 1 cut(s) | 863 |
| BsrBI | CCGCTC | 1 cut(s) | 1173 |
| BsrDI | GCAATG | 2 cut(s) | 1523, 1629 |
| BsrGI | TGTACA | 1 cut(s) | 954 |
| BsrI | ACTGG | 5 cut(s) | 356, 708, 1324, 1497, 1561 |
| BssECI | CCNNGG | 5 cut(s) | 36, 277, 350, 967, 1077 |
| BssMI | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| BssNAI | GTATAC | 1 cut(s) | 1518 |
| BssNI | GRCGYC | 2 cut(s) | 473, 1368 |
| BssT1I | CCWWGG | 2 cut(s) | 350, 1077 |
| Bst1107I | GTATAC | 1 cut(s) | 1518 |
| Bst2UI | CCWGG | 6 cut(s) | 279, 284, 470, 591, 778, 1085 |
| Bst4CI | ACNGT | 5 cut(s) | 454, 712, 1055, 1159, 1579 |
| Bst6I | CTCTTC | 4 cut(s) | 317, 432, 1650, 1697 |
| BstACI | GRCGYC | 2 cut(s) | 473, 1368 |
| BstAFI | CTTAAG | 1 cut(s) | 827 |
| BstAUI | TGTACA | 1 cut(s) | 954 |
| BstBAI | YACGTR | 1 cut(s) | 1508 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 347, 1530 |
| BstDEI | CTNAG | 3 cut(s) | 368, 1395, 1674 |
| BstDSI | CCRYGG | 2 cut(s) | 967, 1077 |
| BstF5I | GGATG | 2 cut(s) | 393, 1181 |
| BstKTI | GATC | 4 cut(s) | 626, 939, 1000, 1609 |
| BstMAI | GTCTC | 4 cut(s) | 332, 633, 863, 1585 |
| BstMBI | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 60, 1367, 1529, 1635, 1679 |
| BstNI | CCWGG | 6 cut(s) | 279, 284, 470, 591, 778, 1085 |
| BstNSI | RCATGY | 1 cut(s) | 1419 |
| BstSCI | CCNGG | 9 cut(s) | 36, 277, 282, 468, 589, 776, 1004, 1083, 1629 |
| BstSFI | CTRYAG | 2 cut(s) | 945, 1453 |
| BstSNI | TACGTA | 1 cut(s) | 1508 |
| BstV1I | GCAGC | 4 cut(s) | 72, 302, 1439, 1467 |
| BstV2I | GAAGAC | 2 cut(s) | 570, 1371 |
| BstX2I | RGATCY | 1 cut(s) | 997 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 880, 1084 |
| BstYI | RGATCY | 1 cut(s) | 997 |
| BstZ17I | GTATAC | 1 cut(s) | 1518 |
| Bsu15I | ATCGAT | 1 cut(s) | 939 |
| BsuI | GTATCC | 1 cut(s) | 1489 |
| BsuRI | GGCC | 6 cut(s) | 108, 282, 355, 614, 885, 1047 |
| BsuTUI | ATCGAT | 1 cut(s) | 939 |
| BtgI | CCRYGG | 2 cut(s) | 967, 1077 |
| BtrI | CACGTC | 1 cut(s) | 192 |
| BtsCI | GGATG | 2 cut(s) | 393, 1181 |
| BtsI | GCAGTG | 1 cut(s) | 954 |
| BtsIMutI | CAGTG | 5 cut(s) | 701, 762, 954, 1133, 1554 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 347, 1530 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1247 |
| CciI | TCATGA | 1 cut(s) | 507 |
| Cfr13I | GGNCC | 6 cut(s) | 107, 613, 883, 1081, 1109, 1320 |
| ClaI | ATCGAT | 1 cut(s) | 939 |
| CseI | GACGC | 5 cut(s) | 148, 296, 462, 1205, 1376 |
| CsiI | ACCWGGT | 1 cut(s) | 776 |
| Csp6I | GTAC | 5 cut(s) | 444, 955, 961, 1122, 1509 |
| CviQI | GTAC | 5 cut(s) | 444, 955, 961, 1122, 1509 |
| DdeI | CTNAG | 3 cut(s) | 368, 1395, 1674 |
| DpnI | GATC | 4 cut(s) | 625, 938, 999, 1608 |
| DpnII | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| DraI | TTTAAA | 1 cut(s) | 1095 |
| DriI | GACNNNNNGTC | 1 cut(s) | 822 |
| EaeI | YGGCCR | 1 cut(s) | 1045 |
| Eam1104I | CTCTTC | 4 cut(s) | 317, 432, 1650, 1697 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 822 |
| EarI | CTCTTC | 4 cut(s) | 317, 432, 1650, 1697 |
| EciI | GGCGGA | 1 cut(s) | 1174 |
| Ecl136II | GAGCTC | 2 cut(s) | 54, 1660 |
| Eco105I | TACGTA | 1 cut(s) | 1508 |
| Eco130I | CCWWGG | 2 cut(s) | 350, 1077 |
| Eco147I | AGGCCT | 1 cut(s) | 282 |
| Eco24I | GRGCYC | 2 cut(s) | 56, 1662 |
| Eco31I | GGTCTC | 1 cut(s) | 863 |
| Eco32I | GATATC | 1 cut(s) | 1404 |
| Eco47I | GGWCC | 3 cut(s) | 1081, 1109, 1320 |
| Eco53kI | GAGCTC | 2 cut(s) | 54, 1660 |
| Eco57I | CTGAAG | 4 cut(s) | 225, 341, 603, 872 |
| EcoICRI | GAGCTC | 2 cut(s) | 54, 1660 |
| EcoRII | CCWGG | 6 cut(s) | 277, 282, 468, 589, 776, 1083 |
| EcoRV | GATATC | 1 cut(s) | 1404 |
| EcoT14I | CCWWGG | 2 cut(s) | 350, 1077 |
| EcoT38I | GRGCYC | 2 cut(s) | 56, 1662 |
| ErhI | CCWWGG | 2 cut(s) | 350, 1077 |
| Esp3I | CGTCTC | 1 cut(s) | 633 |
| FaqI | GGGAC | 1 cut(s) | 260 |
| FauI | CCCGC | 1 cut(s) | 1537 |
| FblI | GTMKAC | 2 cut(s) | 102, 1517 |
| Fnu4HI | GCNGC | 4 cut(s) | 61, 291, 1453, 1456 |
| FokI | GGATG | 2 cut(s) | 400, 1168 |
| FriOI | GRGCYC | 2 cut(s) | 56, 1662 |
| Fsp4HI | GCNGC | 4 cut(s) | 61, 291, 1453, 1456 |
| FspBI | CTAG | 6 cut(s) | 185, 731, 795, 932, 1500, 1584 |
| GluI | GCNGC | 4 cut(s) | 61, 291, 1453, 1456 |
| HaeIII | GGCC | 6 cut(s) | 108, 282, 355, 614, 885, 1047 |
| HapII | CCGG | 4 cut(s) | 38, 611, 1006, 1630 |
| HgaI | GACGC | 5 cut(s) | 148, 296, 462, 1205, 1376 |
| Hin1I | GRCGYC | 2 cut(s) | 473, 1368 |
| HinfI | GANTC | 4 cut(s) | 210, 325, 789, 1339 |
| HpaII | CCGG | 4 cut(s) | 38, 611, 1006, 1630 |
| HphI | GGTGA | 2 cut(s) | 718, 826 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 862, 1518 |
| Hpy188I | TCNGA | 9 cut(s) | 162, 321, 382, 852, 1228, 1258, 1333, 1396, 1468 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 862, 1518 |
| HpyAV | CCTTC | 4 cut(s) | 15, 200, 228, 627 |
| HpyCH4III | ACNGT | 5 cut(s) | 454, 712, 1055, 1159, 1579 |
| HpyCH4IV | ACGT | 3 cut(s) | 191, 1463, 1507 |
| HpyCH4V | TGCA | 8 cut(s) | 169, 391, 947, 1067, 1241, 1309, 1455, 1554 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 60, 1367, 1529, 1635, 1679 |
| HpyF3I | CTNAG | 3 cut(s) | 368, 1395, 1674 |
| HpySE526I | ACGT | 3 cut(s) | 191, 1463, 1507 |
| Hsp92I | GRCGYC | 2 cut(s) | 473, 1368 |
| Kzo9I | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| LguI | GCTCTTC | 2 cut(s) | 1650, 1697 |
| LmnI | GCTCC | 3 cut(s) | 89, 1155, 1665 |
| Lsp1109I | GCAGC | 4 cut(s) | 72, 302, 1439, 1467 |
| LweI | GCATC | 3 cut(s) | 378, 391, 1054 |
| MabI | ACCWGGT | 1 cut(s) | 776 |
| MaeI | CTAG | 6 cut(s) | 185, 731, 795, 932, 1500, 1584 |
| MaeII | ACGT | 3 cut(s) | 191, 1463, 1507 |
| MaeIII | GTNAC | 4 cut(s) | 187, 667, 706, 814 |
| MalI | GATC | 4 cut(s) | 625, 938, 999, 1608 |
| MbiI | CCGCTC | 1 cut(s) | 1173 |
| MboI | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| MboII | GAAGA | 9 cut(s) | 56, 85, 334, 449, 486, 575, 1073, 1376, 1667 |
| MflI | RGATCY | 1 cut(s) | 997 |
| MhlI | GDGCHC | 2 cut(s) | 56, 1662 |
| MlsI | TGGCCA | 1 cut(s) | 1047 |
| MluCI | AATT | 8 cut(s) | 163, 583, 737, 1229, 1334, 1376, 1389, 1479 |
| MluNI | TGGCCA | 1 cut(s) | 1047 |
| MlyI | GAGTC | 1 cut(s) | 334 |
| Mox20I | TGGCCA | 1 cut(s) | 1047 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1390 |
| MscI | TGGCCA | 1 cut(s) | 1047 |
| MseI | TTAA | 9 cut(s) | 18, 135, 234, 828, 914, 1094, 1379, 1460, 1589 |
| MslI | CAYNNNNRTG | 1 cut(s) | 878 |
| Msp20I | TGGCCA | 1 cut(s) | 1047 |
| MspA1I | CMGCKG | 1 cut(s) | 1452 |
| MspCI | CTTAAG | 1 cut(s) | 827 |
| MspI | CCGG | 4 cut(s) | 38, 611, 1006, 1630 |
| MspR9I | CCNGG | 9 cut(s) | 38, 279, 284, 470, 591, 778, 1006, 1085, 1631 |
| MvaI | CCWGG | 6 cut(s) | 279, 284, 470, 591, 778, 1085 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 60, 1367, 1529, 1635, 1679 |
| NciI | CCSGG | 3 cut(s) | 38, 1006, 1631 |
| NcoI | CCATGG | 1 cut(s) | 1077 |
| NdeII | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| NlaIV | GGNNCC | 3 cut(s) | 615, 1151, 1322 |
| NmeAIII | GCCGAG | 1 cut(s) | 1396 |
| NmuCI | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| NspI | RCATGY | 1 cut(s) | 1419 |
| PagI | TCATGA | 1 cut(s) | 507 |
| PceI | AGGCCT | 1 cut(s) | 282 |
| PciSI | GCTCTTC | 2 cut(s) | 1650, 1697 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1390 |
| PfeI | GAWTC | 3 cut(s) | 210, 789, 1339 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 892 |
| PkrI | GCNGC | 4 cut(s) | 62, 292, 1454, 1457 |
| PleI | GAGTC | 1 cut(s) | 333 |
| PpsI | GAGTC | 1 cut(s) | 333 |
| Ppu21I | YACGTR | 1 cut(s) | 1508 |
| PsiI | TTATAA | 1 cut(s) | 771 |
| Psp124BI | GAGCTC | 2 cut(s) | 56, 1662 |
| Psp6I | CCWGG | 6 cut(s) | 277, 282, 468, 589, 776, 1083 |
| PspGI | CCWGG | 6 cut(s) | 277, 282, 468, 589, 776, 1083 |
| PspN4I | GGNNCC | 3 cut(s) | 615, 1151, 1322 |
| PspPI | GGNCC | 6 cut(s) | 107, 613, 883, 1081, 1109, 1320 |
| PstI | CTGCAG | 2 cut(s) | 949, 1457 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1247 |
| PsuI | RGATCY | 1 cut(s) | 997 |
| PvuII | CAGCTG | 1 cut(s) | 1452 |
| RsaI | GTAC | 5 cut(s) | 445, 956, 962, 1123, 1510 |
| RsaNI | GTAC | 5 cut(s) | 444, 955, 961, 1122, 1509 |
| RseI | CAYNNNNRTG | 1 cut(s) | 878 |
| SacI | GAGCTC | 2 cut(s) | 56, 1662 |
| SapI | GCTCTTC | 2 cut(s) | 1650, 1697 |
| SaqAI | TTAA | 9 cut(s) | 18, 135, 234, 828, 914, 1094, 1379, 1460, 1589 |
| SatI | GCNGC | 4 cut(s) | 61, 291, 1453, 1456 |
| Sau3AI | GATC | 4 cut(s) | 623, 936, 997, 1606 |
| Sau96I | GGNCC | 6 cut(s) | 107, 613, 883, 1081, 1109, 1320 |
| ScaI | AGTACT | 1 cut(s) | 445 |
| SchI | GAGTC | 1 cut(s) | 334 |
| ScrFI | CCNGG | 9 cut(s) | 38, 279, 284, 470, 591, 778, 1006, 1085, 1631 |
| SduI | GDGCHC | 2 cut(s) | 56, 1662 |
| SexAI | ACCWGGT | 1 cut(s) | 776 |
| SfaNI | GCATC | 3 cut(s) | 378, 391, 1054 |
| SfcI | CTRYAG | 2 cut(s) | 945, 1453 |
| SinI | GGWCC | 3 cut(s) | 1081, 1109, 1320 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 878 |
| SmlI | CTYRAG | 2 cut(s) | 55, 827 |
| SmoI | CTYRAG | 2 cut(s) | 55, 827 |
| SnaBI | TACGTA | 1 cut(s) | 1508 |
| SpeI | ACTAGT | 2 cut(s) | 184, 794 |
| Sse9I | AATT | 8 cut(s) | 163, 583, 737, 1229, 1334, 1376, 1389, 1479 |
| SseBI | AGGCCT | 1 cut(s) | 282 |
| SsiI | CCGC | 3 cut(s) | 1173, 1185, 1530 |
| SspMI | CTAG | 6 cut(s) | 185, 731, 795, 932, 1500, 1584 |
| SstI | GAGCTC | 2 cut(s) | 56, 1662 |
| StuI | AGGCCT | 1 cut(s) | 282 |
| StyD4I | CCNGG | 9 cut(s) | 36, 277, 282, 468, 589, 776, 1004, 1083, 1629 |
| StyI | CCWWGG | 2 cut(s) | 350, 1077 |
| TaaI | ACNGT | 5 cut(s) | 454, 712, 1055, 1159, 1579 |
| TaiI | ACGT | 3 cut(s) | 194, 1466, 1510 |
| TaqI | TCGA | 6 cut(s) | 24, 96, 313, 449, 939, 994 |
| TasI | AATT | 8 cut(s) | 163, 583, 737, 1229, 1334, 1376, 1389, 1479 |
| TatI | WGTACW | 2 cut(s) | 443, 954 |
| TfiI | GAWTC | 3 cut(s) | 210, 789, 1339 |
| Tru1I | TTAA | 9 cut(s) | 18, 135, 234, 828, 914, 1094, 1379, 1460, 1589 |
| Tru9I | TTAA | 9 cut(s) | 18, 135, 234, 828, 914, 1094, 1379, 1460, 1589 |
| TscAI | CASTG | 5 cut(s) | 708, 769, 954, 1140, 1561 |
| TseFI | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| TseI | GCWGC | 4 cut(s) | 60, 290, 1452, 1455 |
| Tsp45I | GTSAC | 4 cut(s) | 187, 667, 706, 814 |
| TspDTI | ATGAA | 6 cut(s) | 202, 210, 524, 879, 1278, 1629 |
| TspGWI | ACGGA | 1 cut(s) | 1156 |
| TspRI | CASTG | 5 cut(s) | 708, 769, 954, 1140, 1561 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 892 |
| Vha464I | CTTAAG | 1 cut(s) | 827 |
| VpaK11BI | GGWCC | 3 cut(s) | 1081, 1109, 1320 |
| XapI | RAATTY | 3 cut(s) | 163, 1389, 1479 |
| XbaI | TCTAGA | 1 cut(s) | 1583 |
| XceI | RCATGY | 1 cut(s) | 1419 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1427 |
| XmiI | GTMKAC | 2 cut(s) | 102, 1517 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1390 |
| XspI | CTAG | 6 cut(s) | 185, 731, 795, 932, 1500, 1584 |
| ZrmI | AGTACT | 1 cut(s) | 445 |