Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Reverse (-)

838785 .. 840227

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGACCTGGCACTTTTAAAGATTAGACATGGACCTGACTTTGGTACAGCACCATCACTAGTACGGAAAAGGCTCCTAACTGTTTTGAGTGAGAGCGGAAATACTTCCTCTATCATTGATGATATTTCCATTGTGAAGCGTCATGCCTCTGAATTATCCCATGCAGTGCCTGTGTTCTCTGATGACGAAGCTCTTTCCAAAGCTCAAAAGGAGGCAAGGAATGAGAAAGTGCAATTCATCTGGACCCAGTTTTCTGAATTGAATCGTTATTTCACTAAACAAGCAGAGGATGCAGAGAAATTGAATGGAAAAATTGCGGAGTTGATATCCTTGCTTACATGTCATAAGAATTCTGGAAATAAAAAAGGTATTAGATGCAGCTTAACGTCTGAACTAAAGGAAATTCTTATGCGACTGGATACTAGAATACGTACCTTGTATGCCGCATTGCCCACTAATGCCATGCTTATTGTCTGCACTGGTCATGGAGATATAGCAACTGTCTCTAGATTAAAGAAAATGCTTATGGATCGTAGTGAAACAACAATGTGCCGTGAGAGCATTGTAAAGGTATTGGAAGAGCTCCAAGCCCAAGCTGAGGTAGCATTGTGTTTTGTTGGTGTGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

211

Amino Acids

23.39

Weight (kDa)

8.79

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	96
AciI	CCGC	3 cut(s)	96, 317, 444
AclWI	GGATC	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	349, 402
AfaI	GTAC	3 cut(s)	46, 63, 433
AfiI	CCNNNNNNNGG	2 cut(s)	41, 598
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	262, 304
AhlI	ACTAGT	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	5 cut(s)	191, 203, 381, 583, 596
AluI	AGCT	5 cut(s)	191, 203, 381, 583, 596
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	537
AlwNI	CAGNNNCTG	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	2 cut(s)	349, 402
Asp700I	GAANNNNTTC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	4, 32, 243
AvaII	GGWCC	3 cut(s)	4, 32, 243
BanII	GRGCYC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	585
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	537
BciT130I	CCWGG	1 cut(s)	8
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	508
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	3 cut(s)	59, 423, 507
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	379, 444
BlsI	GCNGC	2 cut(s)	380, 445
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	3 cut(s)	4, 32, 243
BmgT120I	GGNCC	3 cut(s)	4, 32, 243
BmiI	GGNNCC	2 cut(s)	74, 245
BmrFI	CCNGG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	280, 365
BmuI	ACTGGG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 598
Bse1I	ACTGG	3 cut(s)	247, 420, 484
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	2 cut(s)	41, 598
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	3 cut(s)	247, 420, 484
BseXI	GCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	585
BslI	CCNNNNNNNGG	2 cut(s)	41, 598
BsmAI	GTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	3 cut(s)	96, 317, 444
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	74, 245
BspPI	GGATC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	573
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	3 cut(s)	247, 420, 484
BssMI	GATC	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	2 cut(s)	82, 502
Bst6I	CTCTTC	2 cut(s)	573, 620
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	431
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 558, 602
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	6
BstSNI	TACGTA	1 cut(s)	431
BstV1I	GCAGC	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 477
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	4, 32, 243
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	45, 62, 432
CviAII	CATG	6 cut(s)	29, 143, 161, 339, 463, 485
CviJI	RGCY	7 cut(s)	73, 191, 203, 381, 583, 590, 596
CviKI_1	RGCY	7 cut(s)	73, 191, 203, 381, 583, 590, 596
CviQI	GTAC	3 cut(s)	45, 62, 432
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
DraI	TTTAAA	1 cut(s)	18
Eam1104I	CTCTTC	2 cut(s)	573, 620
EarI	CTCTTC	2 cut(s)	573, 620
Ecl136II	GAGCTC	1 cut(s)	583
Eco105I	TACGTA	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	4, 32, 243
Eco53kI	GAGCTC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	583
EcoRI	GAATTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	6 cut(s)	32, 146, 164, 342, 466, 488
FatI	CATG	6 cut(s)	28, 142, 160, 338, 462, 484
Fnu4HI	GCNGC	2 cut(s)	379, 444
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	379, 444
FspBI	CTAG	3 cut(s)	59, 423, 507
GluI	GCNGC	2 cut(s)	379, 444
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	32, 146, 164, 342, 466, 488
HinfI	GANTC	1 cut(s)	262
Hpy188I	TCNGA	4 cut(s)	151, 181, 256, 391
Hpy188III	TCNNGA	3 cut(s)	241, 354, 507
HpyCH4III	ACNGT	2 cut(s)	82, 502
HpyCH4IV	ACGT	2 cut(s)	386, 430
HpyCH4V	TGCA	5 cut(s)	164, 232, 293, 378, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 558, 602
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	2 cut(s)	386, 430
Hsp92II	CATG	6 cut(s)	32, 146, 164, 342, 466, 488
Kzo9I	GATC	1 cut(s)	529
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	78, 588
LpnPI	CCDG	8 cut(s)	20, 48, 183, 226, 260, 339, 401, 465
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	2 cut(s)	280, 365
MaeI	CTAG	3 cut(s)	59, 423, 507
MaeII	ACGT	2 cut(s)	386, 430
MalI	GATC	1 cut(s)	531
MbiI	CCGCTC	1 cut(s)	96
MboI	GATC	1 cut(s)	529
MboII	GAAGA	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	7 cut(s)	152, 233, 257, 299, 312, 349, 402
MnlI	CCTC	5 cut(s)	118, 157, 205, 280, 592
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	17, 383, 512
MspR9I	CCNGG	1 cut(s)	8
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	290, 558, 602
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	6 cut(s)	32, 146, 164, 342, 466, 488
NlaIV	GGNNCC	2 cut(s)	74, 245
NspI	RCATGY	1 cut(s)	342
PciI	ACATGT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	573
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	380, 445
Ppu21I	YACGTR	1 cut(s)	431
PscI	ACATGT	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	74, 245
PspPI	GGNCC	3 cut(s)	4, 32, 243
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	3 cut(s)	46, 63, 433
RsaNI	GTAC	3 cut(s)	45, 62, 432
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	17, 383, 512
SatI	GCNGC	2 cut(s)	379, 444
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	3 cut(s)	4, 32, 243
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	280, 365
SinI	GGWCC	3 cut(s)	4, 32, 243
SnaBI	TACGTA	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	7 cut(s)	152, 233, 257, 299, 312, 349, 402
SsiI	CCGC	3 cut(s)	96, 317, 444
SspMI	CTAG	3 cut(s)	59, 423, 507
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	82, 502
TaiI	ACGT	2 cut(s)	389, 433
TasI	AATT	7 cut(s)	152, 233, 257, 299, 312, 349, 402
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	3 cut(s)	17, 383, 512
Tru9I	TTAA	3 cut(s)	17, 383, 512
TscAI	CASTG	2 cut(s)	171, 484
TseI	GCWGC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	171, 484
VpaK11BI	GGWCC	3 cut(s)	4, 32, 243
XapI	RAATTY	2 cut(s)	349, 402
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	3 cut(s)	59, 423, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.