Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Reverse (-)

29702998 .. 29703955

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGGATCGAGCCACCATGGCATGACCTCCGAAGGCAAAAACGTAGGCATGAGCGTGGCCAAGCTGAAGGTGCTGTTCAACAACAACCACAAGGGCGCGGTGTCTCCGCCTCGGCCTCAAAGTTGCAATTCCGTGTTTCCCATGATCTCAAGGCACAACAAGGAGAGATGATTATGGTTGCGAAGCTTGCTGACCCCGGTTATGCATTTCAACTCTCTTCTTTTTCCTTCTCGCTGGTTTGTTACTTTGGAGTACCTGTCGATATAATGGGAAGTGGATGGCGGGATCGGAGCCGGATGGCGAGTGAACACCGAGCTCGGTCATGGTGTGGAATCGGAGCTGTGGTGAATTTTGGAGGAGTGTACTGCTGGAACAGTTTGGTGGTGTCAATGATTGGAGTTAGAAGGAGCAGTGGTAAATGTCGAATATATGGCTGTGTGGAATTGAGTTCGGCCACTGTCTTGGGTAAATTTCGTACCCTCCTTGGTTTGGAAATTGAATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009528 GO:0009536 GO:0009706 GO:0009707 GO:0009941 GO:0015075 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0034220 GO:0042170 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

9.9

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	4, 99, 108, 283
AclWI	GGATC	2 cut(s)	14, 294
AcoI	YGGCCR	2 cut(s)	58, 453
AcsI	RAATTY	2 cut(s)	349, 470
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	3 cut(s)	255, 365, 478
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	80, 212, 500
AluBI	AGCT	4 cut(s)	65, 187, 317, 341
AluI	AGCT	4 cut(s)	65, 187, 317, 341
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	109
AlwI	GGATC	2 cut(s)	14, 294
AoxI	GGCC	3 cut(s)	58, 114, 453
ApoI	RAATTY	2 cut(s)	349, 470
AspLEI	GCGC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	2 cut(s)	273, 292
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	4 cut(s)	17, 111, 196, 484
BsaXI	ACNNNNNCTCC	6 cut(s)	243, 273, 330, 360, 400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	17, 111, 196, 484
BseGI	GGATG	2 cut(s)	284, 303
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	60, 116, 455
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	198, 295
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	60, 116, 455
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	6, 145, 286
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	4 cut(s)	4, 99, 108, 283
BspANI	GGCC	3 cut(s)	60, 116, 455
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	293
BspPI	GGATC	2 cut(s)	14, 294
BssECI	CCNNGG	4 cut(s)	17, 111, 196, 484
BssMI	GATC	3 cut(s)	6, 145, 286
BssT1I	CCWWGG	2 cut(s)	17, 484
Bst4CI	ACNGT	2 cut(s)	377, 460
Bst6I	CTCTTC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	284, 303
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	9, 148, 289
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	3 cut(s)	6, 145, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 188
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	60, 116, 455
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	284, 303
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 456
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	254, 364, 477
CviAII	CATG	5 cut(s)	18, 23, 50, 143, 324
CviQI	GTAC	3 cut(s)	254, 364, 477
DpnI	GATC	3 cut(s)	8, 147, 288
DpnII	GATC	3 cut(s)	6, 145, 286
EaeI	YGGCCR	2 cut(s)	58, 453
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	17, 484
Eco24I	GRGCYC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	87
EcoICRI	GAGCTC	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	17, 484
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	2 cut(s)	17, 484
FaeI	CATG	5 cut(s)	21, 26, 53, 146, 327
FatI	CATG	5 cut(s)	17, 22, 49, 142, 323
FauI	CCCGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	291, 310
FriOI	GRGCYC	1 cut(s)	319
GlaI	GCGC	1 cut(s)	98
HaeIII	GGCC	3 cut(s)	60, 116, 455
HapII	CCGG	2 cut(s)	198, 295
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	21, 26, 53, 146, 327
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	333
HpaII	CCGG	2 cut(s)	198, 295
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	308, 364
Hpy188I	TCNGA	3 cut(s)	32, 291, 338
Hpy8I	GTNNAC	2 cut(s)	308, 364
HpyAV	CCTTC	4 cut(s)	27, 62, 238, 399
HpyCH4III	ACNGT	2 cut(s)	377, 460
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	127, 206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 188
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	21, 26, 53, 146, 327
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	6, 145, 286
LmnI	GCTCC	3 cut(s)	291, 338, 408
LpnPI	CCDG	5 cut(s)	211, 221, 270, 308, 355
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	8, 147, 288
MboI	GATC	3 cut(s)	6, 145, 286
MboII	GAAGA	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	6 cut(s)	128, 349, 443, 470, 495, 500
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	5 cut(s)	38, 121, 127, 350, 491
Mox20I	TGGCCA	1 cut(s)	60
Mph1103I	ATGCAT	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	60
MspI	CCGG	2 cut(s)	198, 295
MspR9I	CCNGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 71, 188
NciI	CCSGG	1 cut(s)	198
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	6, 145, 286
NlaIII	CATG	5 cut(s)	21, 26, 53, 146, 327
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	255, 365, 478
RsaNI	GTAC	3 cut(s)	254, 364, 477
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	6, 145, 286
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	8 cut(s)	30, 46, 67, 73, 189, 259, 319, 343
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	6 cut(s)	128, 349, 443, 470, 495, 500
SsiI	CCGC	4 cut(s)	4, 99, 108, 283
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	2 cut(s)	17, 484
TaaI	ACNGT	2 cut(s)	377, 460
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	3 cut(s)	9, 261, 424
TaqII	GACCGA	1 cut(s)	309
TasI	AATT	6 cut(s)	128, 349, 443, 470, 495, 500
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	333
TscAI	CASTG	2 cut(s)	418, 463
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	418, 463
XapI	RAATTY	2 cut(s)	349, 470
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.