Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Forward (+)

2499481 .. 2499870

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTTAGATGGGGTGACTACAAGCCTCAAAGATATTCGGGAGGACTTCTTAAAAGCTGGTTTACAAAGAGACCGTCTTAGTTGCGTATTGTACAAGCACCCCGGCCAACGATCTTACAAATCTGCTCTTAGAGTTCTTGCCAAGAGATATCTTTCTAAAGAGATCCAGCTGTCGGGGAATGGTCATGATAGTACCGAAGATGCAAGAGCTGCTATGGAACTGGCGCTTTTAAAGATTAGACATGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTGAGAAGACGCAGCGGGATTCGAGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RNase_T

Protein Analysis

108

Amino Acids

12.16

Weight (kDa)

9.2

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	266, 309
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	103
AfaI	GTAC	2 cut(s)	92, 193
AfiI	CCNNNNNNNGG	1 cut(s)	172
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	3 cut(s)	56, 169, 209
AluI	AGCT	3 cut(s)	56, 169, 209
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	209, 306
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	25, 257, 287
BbsI	GAAGAC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	196, 318
BccI	CCATC	2 cut(s)	2, 266
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	2 cut(s)	210, 307
BlsI	GCNGC	2 cut(s)	211, 308
Bme1390I	CCNGG	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	196, 318
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	110, 162, 247
BspACI	CCGC	2 cut(s)	266, 309
BspANI	GGCC	1 cut(s)	105
BspHI	TCATGA	1 cut(s)	184
BspPI	GGATC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	63
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	110, 162, 247
Bst4CI	ACNGT	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	77, 128
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	3 cut(s)	113, 165, 250
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	110, 162, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	196, 318
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	226
CseI	GACGC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	91, 192
CviAII	CATG	2 cut(s)	185, 242
CviJI	RGCY	6 cut(s)	24, 56, 105, 169, 209, 292
CviKI_1	RGCY	6 cut(s)	24, 56, 105, 169, 209, 292
CviQI	GTAC	2 cut(s)	91, 192
DdeI	CTNAG	2 cut(s)	77, 128
DpnI	GATC	3 cut(s)	112, 164, 249
DpnII	GATC	3 cut(s)	110, 162, 247
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	149
EcoRV	GATATC	1 cut(s)	149
FaeI	CATG	2 cut(s)	188, 245
FaiI	YATR	3 cut(s)	186, 215, 243
FatI	CATG	2 cut(s)	184, 241
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	210, 307
Fsp4HI	GCNGC	2 cut(s)	210, 307
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	210, 307
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	312
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	2 cut(s)	188, 245
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	278, 313
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	25, 257, 287
Hpy166II	GTNNAC	1 cut(s)	62
Hpy188III	TCNNGA	2 cut(s)	38, 185
Hpy8I	GTNNAC	1 cut(s)	62
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	77, 128
Hsp92II	CATG	2 cut(s)	188, 245
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	110, 162, 247
LpnPI	CCDG	4 cut(s)	42, 115, 179, 206
Lsp1109I	GCAGC	2 cut(s)	196, 318
LweI	GCATC	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	3 cut(s)	112, 164, 249
MboI	GATC	3 cut(s)	110, 162, 247
MboII	GAAGA	2 cut(s)	209, 312
MflI	RGATCY	1 cut(s)	162
MnlI	CCTC	3 cut(s)	34, 35, 311
MseI	TTAA	2 cut(s)	50, 230
MspA1I	CMGCKG	2 cut(s)	169, 309
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	110, 162, 247
NlaIII	CATG	2 cut(s)	188, 245
NmuCI	GTSAC	1 cut(s)	13
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	278, 313
PkrI	GCNGC	2 cut(s)	211, 308
PsuI	RGATCY	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	92, 193
RsaNI	GTAC	2 cut(s)	91, 192
SaqAI	TTAA	2 cut(s)	50, 230
SatI	GCNGC	2 cut(s)	210, 307
Sau3AI	GATC	3 cut(s)	110, 162, 247
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	4 cut(s)	58, 171, 211, 322
SfaNI	GCATC	1 cut(s)	190
SsiI	CCGC	2 cut(s)	266, 309
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	316
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	278, 313
Tru1I	TTAA	2 cut(s)	50, 230
Tru9I	TTAA	2 cut(s)	50, 230
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	209, 306
Tsp45I	GTSAC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.