Small RNA degrading nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G25800 AT5G25800 |
| fragaria_vesca | FvH4_2g15020 FvH4_2g15020 FvH4_4g14244 |
| malus_domestica | MD05G1011300.v1.1 MD10G1011100.v1.1 |
| prunus_persica | Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 |
| pyrus_communis | pycom05g00660 pycom10g00710 |
| rosa_chinensis | RchiOBHm_Chr6g0277571 |
| rosa_laevigata | RLG00000013291 |
| rosa_multiflora | Rmu_co8201914.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200 |
| rosa_rugosa | Rorug06G0109700 |
| rosa_samantha | Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000 |
| rosa_wichuraiana | Rw6G019280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 116 |
| Acc36I | ACCTGC | 1 cut(s) | 116 |
| AcsI | RAATTY | 3 cut(s) | 91, 134, 166 |
| AfaI | GTAC | 1 cut(s) | 180 |
| AgsI | TTSAA | 1 cut(s) | 159 |
| AhlI | ACTAGT | 1 cut(s) | 187 |
| AjiI | CACGTC | 1 cut(s) | 195 |
| AluBI | AGCT | 4 cut(s) | 41, 87, 119, 152 |
| AluI | AGCT | 4 cut(s) | 41, 87, 119, 152 |
| Alw26I | GTCTC | 1 cut(s) | 60 |
| AoxI | GGCC | 1 cut(s) | 110 |
| ApoI | RAATTY | 3 cut(s) | 91, 134, 166 |
| AspS9I | GGNCC | 1 cut(s) | 110 |
| AsuII | TTCGAA | 1 cut(s) | 171 |
| BbsI | GAAGAC | 1 cut(s) | 57 |
| BccI | CCATC | 1 cut(s) | 203 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BcoDI | GTCTC | 1 cut(s) | 60 |
| BcuI | ACTAGT | 1 cut(s) | 187 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BfuAI | ACCTGC | 1 cut(s) | 116 |
| BmgBI | CACGTC | 1 cut(s) | 195 |
| BmgT120I | GGNCC | 1 cut(s) | 110 |
| BpiI | GAAGAC | 1 cut(s) | 57 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| Bpu14I | TTCGAA | 1 cut(s) | 171 |
| BpuEI | CTTGAG | 1 cut(s) | 99 |
| BsaI | GGTCTC | 1 cut(s) | 60 |
| BsaJI | CCNNGG | 1 cut(s) | 45 |
| BseDI | CCNNGG | 1 cut(s) | 45 |
| BshFI | GGCC | 1 cut(s) | 112 |
| BsmAI | GTCTC | 1 cut(s) | 60 |
| BsnI | GGCC | 1 cut(s) | 112 |
| Bso31I | GGTCTC | 1 cut(s) | 60 |
| Bsp119I | TTCGAA | 1 cut(s) | 171 |
| BspANI | GGCC | 1 cut(s) | 112 |
| BspMI | ACCTGC | 1 cut(s) | 116 |
| BspT104I | TTCGAA | 1 cut(s) | 171 |
| BspTNI | GGTCTC | 1 cut(s) | 60 |
| BssECI | CCNNGG | 1 cut(s) | 45 |
| Bst4CI | ACNGT | 1 cut(s) | 17 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstBI | TTCGAA | 1 cut(s) | 171 |
| BstC8I | GCNNGC | 1 cut(s) | 204 |
| BstMAI | GTCTC | 1 cut(s) | 60 |
| BstV2I | GAAGAC | 1 cut(s) | 57 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 77 |
| BsuRI | GGCC | 1 cut(s) | 112 |
| BtrI | CACGTC | 1 cut(s) | 195 |
| BveI | ACCTGC | 1 cut(s) | 116 |
| Cac8I | GCNNGC | 1 cut(s) | 204 |
| Cfr13I | GGNCC | 1 cut(s) | 110 |
| Csp6I | GTAC | 1 cut(s) | 179 |
| CviAII | CATG | 1 cut(s) | 217 |
| CviJI | RGCY | 5 cut(s) | 41, 87, 112, 119, 152 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 87, 112, 119, 152 |
| CviQI | GTAC | 1 cut(s) | 179 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 1 cut(s) | 60 |
| FaeI | CATG | 1 cut(s) | 220 |
| FaiI | YATR | 3 cut(s) | 99, 108, 218 |
| FatI | CATG | 1 cut(s) | 216 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeIII | GGCC | 1 cut(s) | 112 |
| Hin1II | CATG | 1 cut(s) | 220 |
| HinfI | GANTC | 3 cut(s) | 56, 142, 213 |
| Hpy188I | TCNGA | 1 cut(s) | 165 |
| Hpy188III | TCNNGA | 1 cut(s) | 146 |
| Hpy99I | CGWCG | 1 cut(s) | 226 |
| HpyAV | CCTTC | 1 cut(s) | 15 |
| HpyCH4III | ACNGT | 1 cut(s) | 17 |
| HpyCH4IV | ACGT | 2 cut(s) | 102, 194 |
| HpySE526I | ACGT | 2 cut(s) | 102, 194 |
| Hsp92II | CATG | 1 cut(s) | 220 |
| LpnPI | CCDG | 3 cut(s) | 83, 111, 159 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MaeII | ACGT | 2 cut(s) | 102, 194 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MboII | GAAGA | 4 cut(s) | 38, 41, 62, 185 |
| MluCI | AATT | 3 cut(s) | 91, 134, 166 |
| MlyI | GAGTC | 2 cut(s) | 50, 136 |
| MnlI | CCTC | 3 cut(s) | 40, 123, 169 |
| MseI | TTAA | 1 cut(s) | 138 |
| NlaIII | CATG | 1 cut(s) | 220 |
| NmuCI | GTSAC | 1 cut(s) | 190 |
| NspV | TTCGAA | 1 cut(s) | 171 |
| PaqCI | CACCTGC | 1 cut(s) | 116 |
| PfeI | GAWTC | 1 cut(s) | 213 |
| PleI | GAGTC | 2 cut(s) | 50, 136 |
| PpsI | GAGTC | 2 cut(s) | 50, 136 |
| PspPI | GGNCC | 1 cut(s) | 110 |
| RsaI | GTAC | 1 cut(s) | 180 |
| RsaNI | GTAC | 1 cut(s) | 179 |
| SaqAI | TTAA | 1 cut(s) | 138 |
| Sau96I | GGNCC | 1 cut(s) | 110 |
| SchI | GAGTC | 2 cut(s) | 50, 136 |
| SetI | ASST | 8 cut(s) | 43, 89, 105, 121, 130, 154, 180, 197 |
| SfuI | TTCGAA | 1 cut(s) | 171 |
| SmlI | CTYRAG | 1 cut(s) | 114 |
| SmoI | CTYRAG | 1 cut(s) | 114 |
| SpeI | ACTAGT | 1 cut(s) | 187 |
| Sse9I | AATT | 3 cut(s) | 91, 134, 166 |
| SspMI | CTAG | 1 cut(s) | 188 |
| TaaI | ACNGT | 1 cut(s) | 17 |
| TaiI | ACGT | 2 cut(s) | 105, 197 |
| TaqI | TCGA | 2 cut(s) | 89, 171 |
| TasI | AATT | 3 cut(s) | 91, 134, 166 |
| TfiI | GAWTC | 1 cut(s) | 213 |
| Tru1I | TTAA | 1 cut(s) | 138 |
| Tru9I | TTAA | 1 cut(s) | 138 |
| TseFI | GTSAC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 190 |
| TspDTI | ATGAA | 1 cut(s) | 205 |
| XapI | RAATTY | 3 cut(s) | 91, 134, 166 |
| XspI | CTAG | 1 cut(s) | 188 |