Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003406

Physical Location & Seq

Genomic Coordinates Reverse (-)

49953780 .. 49954238

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGGGCCTTACTTGTTACTAGCCAGTTAACTCTCAAGATTTTAGAGCCTATGTTAGCTACTTATGCGGTCGACAATCCCATTGATAAGGCTATTGGTCTTGCTCGAGTACCCGTCGATGCAATTGGTGAACTCACCGTTGAACGGATAATGGAGGATCAGCGAGCCTCAATCAACACATATTGTCATTTCTCAACGACGGGATCTGTAGATGGGGCTTGTCTTCCAAAACAAAGAGAGCTGCCATCGGAGTCGATTCTTGACTTCTTCTCCAAGGCCACTAAGGAAGCTGGTGGGAGAAGTGGTGATCAATCGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGAGTAGAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0009987 GO:0016043 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7 Band_7_C

Protein Analysis

128

Amino Acids

13.93

Weight (kDa)

4.89

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25800 AT5G25800
fragaria_vesca	FvH4_2g15020 FvH4_2g15020 FvH4_4g14244
malus_domestica	MD05G1011300.v1.1 MD10G1011100.v1.1
prunus_persica	Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1 Prupe.8G016300_v2.0.a1
pyrus_communis	pycom05g00660 pycom10g00710
rosa_chinensis	RchiOBHm_Chr6g0277571
rosa_laevigata	RLG00000013291
rosa_multiflora	Rmu_co8201914.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239400 Rroxscaffold_3G00248790 Rroxscaffold_4G00320900 Rroxscaffold_4G00323660 Rroxscaffold_4G00323670 Rroxscaffold_5G00362250 Rroxscaffold_6G00389120 Rroxscaffold_6G00389130 Rroxscaffold_6G00389140 Rroxscaffold_6G00394340 Rroxscaffold_6G00401850 Rroxscaffold_6G00404000 Rroxscaffold_6G00409440 Rroxscaffold_7G00191200
rosa_rugosa	Rorug06G0109700
rosa_samantha	Rh4CG232400 Rh6AG220200 Rh6BG224100 Rh6CG226400 Rh6DG217000
rosa_wichuraiana	Rw6G019280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	72
AciI	CCGC	3 cut(s)	68, 326, 369
AclWI	GGATC	2 cut(s)	165, 211
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	3 cut(s)	59, 241, 290
AluI	AGCT	3 cut(s)	59, 241, 290
AlwI	GGATC	2 cut(s)	165, 211
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	2 cut(s)	6, 276
ApeKI	GCWGC	2 cut(s)	241, 366
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	4 cut(s)	127, 140, 317, 347
AvaI	CYCGRG	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	215, 367
BbvI	GCAGC	2 cut(s)	228, 378
BccI	CCATC	3 cut(s)	206, 253, 326
BclI	TGATCA	1 cut(s)	307
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	242, 367
BlsI	GCNGC	2 cut(s)	243, 368
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	2 cut(s)	215, 367
BpuEI	CTTGAG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	273
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 289, 319
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	228, 378
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	8, 278
BshVI	ATCGAT	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	2 cut(s)	8, 278
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	157, 203, 307
BspACI	CCGC	3 cut(s)	68, 326, 369
BspANI	GGCC	2 cut(s)	8, 278
BspDI	ATCGAT	1 cut(s)	314
BspPI	GGATC	2 cut(s)	165, 211
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	157, 203, 307
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	160, 206, 310
BstMBI	GATC	3 cut(s)	157, 203, 307
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	228, 378
BstV2I	GAAGAC	2 cut(s)	215, 367
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	8, 278
BsuTUI	ATCGAT	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	314
CseI	GACGC	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	110
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	159, 205, 309
DpnII	GATC	3 cut(s)	157, 203, 307
EciI	GGCGGA	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaiI	YATR	3 cut(s)	53, 66, 181
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	242, 367
Fsp4HI	GCNGC	2 cut(s)	242, 367
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	242, 367
HaeIII	GGCC	2 cut(s)	8, 278
HgaI	GACGC	1 cut(s)	372
HincII	GTYRAC	2 cut(s)	30, 73
HindII	GTYRAC	2 cut(s)	30, 73
HinfI	GANTC	3 cut(s)	251, 256, 338
HpaI	GTTAAC	1 cut(s)	30
HphI	GGTGA	4 cut(s)	127, 140, 317, 347
Hpy166II	GTNNAC	3 cut(s)	30, 73, 131
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	2 cut(s)	37, 260
Hpy8I	GTNNAC	3 cut(s)	30, 73, 131
Hpy99I	CGWCG	2 cut(s)	119, 202
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	157, 203, 307
LpnPI	CCDG	2 cut(s)	38, 276
Lsp1109I	GCAGC	2 cut(s)	228, 378
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	3 cut(s)	159, 205, 309
MboI	GATC	3 cut(s)	157, 203, 307
MboII	GAAGA	3 cut(s)	215, 259, 372
MfeI	CAATTG	1 cut(s)	123
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	2 cut(s)	148, 178
MseI	TTAA	2 cut(s)	29, 356
MspA1I	CMGCKG	1 cut(s)	369
MunI	CAATTG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	157, 203, 307
PaeR7I	CTCGAG	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	256, 338
PkrI	GCNGC	2 cut(s)	243, 368
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	29, 356
SatI	GCNGC	2 cut(s)	242, 367
Sau3AI	GATC	3 cut(s)	157, 203, 307
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	260
SetI	ASST	3 cut(s)	61, 243, 292
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	35, 105
SmoI	CTYRAG	2 cut(s)	35, 105
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	3 cut(s)	68, 326, 369
SspMI	CTAG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	5 cut(s)	72, 106, 117, 254, 314
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	256, 338
Tru1I	TTAA	2 cut(s)	29, 356
Tru9I	TTAA	2 cut(s)	29, 356
TseI	GCWGC	2 cut(s)	241, 366
TspGWI	ACGGA	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.