Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Reverse (-)

20028729 .. 20029286

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGGAAATTCTGGCATATCAAACGGAAGAGAAGGCGGTGATGAGGTCTTTACCATCACCCTCAGGAAGATGGGTCTTTCTGACATTGATGATTTCATGGTTTGGGGCACAGATGAGAAAGTGGCTCGTTTCTGCACTTGGGAGCCTTATGGTAGCAAAGAAGAGGGGCTCAATCACATCAAGGAAAAGATCCTCCCACATCCATGGTTTAGGGCAATTTGTCTTGATGGCAGGCCTGTTGGTGTTATTCTAGTAAACCCGAATTCAGGTAATGATCGGTGTCGAGCTGAAATCGGCTATGCCTTGGGGTCCAAGTACTGGAGGAAAGGAATTGTTACAAGGGCAGTGAAGATGGTGGTTAATACTATTTTTAAGGAGTGGACACATTTGGAGAGACTGGAAGGTCTTGTTGATGTGAACAATGTGGGATCACAAAGGGTTCTGGAGAAGGCTGGATTTCAAAGGGAAGGTGTTTTGAGGAAGCATTATATTAACAAAGGAAGAACTATAGACGAGGTCATTTATAGTATTCTATCCTCCGAATGTAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

186

Amino Acids

20.97

Weight (kDa)

8.32

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	20 - 155	2e-22	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	65 - 154	5.5e-11	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	405
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	187, 439
AcsI	RAATTY	2 cut(s)	10, 265
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	2 cut(s)	269, 321
AgsI	TTSAA	1 cut(s)	464
AluBI	AGCT	1 cut(s)	290
AluI	AGCT	1 cut(s)	290
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	187, 439
AoxI	GGCC	1 cut(s)	236
ApoI	RAATTY	2 cut(s)	10, 265
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	52, 53
AvaII	GGWCC	1 cut(s)	312
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	174
BccI	CCATC	4 cut(s)	65, 67, 224, 349
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	320
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	147, 313
BpmI	CTGGAG	2 cut(s)	343, 467
BsaJI	CCNNGG	2 cut(s)	206, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 321
Bse1I	ACTGG	2 cut(s)	326, 405
Bse21I	CCTNAGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	206, 306
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	269, 321
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	326, 405
BseSI	GKGCMC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	269, 321
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	113, 174
Bsp143I	GATC	3 cut(s)	192, 277, 431
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	147, 313
BspPI	GGATC	2 cut(s)	187, 439
BsrI	ACTGG	2 cut(s)	326, 405
BssECI	CCNNGG	2 cut(s)	206, 306
BssMI	GATC	3 cut(s)	192, 277, 431
BssT1I	CCWWGG	2 cut(s)	206, 306
Bst6I	CTCTTC	2 cut(s)	25, 159
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	195, 280, 434
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	3 cut(s)	192, 277, 431
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	100, 207
CviJI	RGCY	7 cut(s)	128, 148, 172, 238, 290, 300, 455
CviKI_1	RGCY	7 cut(s)	128, 148, 172, 238, 290, 300, 455
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	194, 279, 433
DpnII	GATC	3 cut(s)	192, 277, 431
DrdI	GACNNNNNNGTC	1 cut(s)	405
DseDI	GACNNNNNNGTC	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	25, 159
EarI	CTCTTC	2 cut(s)	25, 159
Eco130I	CCWWGG	2 cut(s)	206, 306
Eco147I	AGGCCT	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	312
Eco81I	CCTNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	206, 306
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	206, 306
FaeI	CATG	2 cut(s)	103, 210
FaiI	YATR	8 cut(s)	20, 101, 153, 208, 303, 492, 512, 528
FatI	CATG	2 cut(s)	99, 206
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	254
GsuI	CTGGAG	2 cut(s)	343, 467
HaeIII	GGCC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	103, 210
HphI	GGTGA	2 cut(s)	52, 53
Hpy166II	GTNNAC	3 cut(s)	259, 384, 421
Hpy188I	TCNGA	2 cut(s)	85, 544
Hpy188III	TCNNGA	3 cut(s)	67, 227, 446
Hpy8I	GTNNAC	3 cut(s)	259, 384, 421
HpyAV	CCTTC	4 cut(s)	29, 398, 445, 464
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	103, 210
Kzo9I	GATC	3 cut(s)	192, 277, 431
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	52, 220, 252, 255, 307, 386, 431, 441
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	3 cut(s)	194, 279, 433
MboI	GATC	3 cut(s)	192, 277, 431
MboII	GAAGA	5 cut(s)	42, 82, 176, 364, 516
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	113, 174
MluCI	AATT	5 cut(s)	10, 219, 265, 333, 553
MnlI	CCTC	8 cut(s)	40, 74, 160, 206, 318, 474, 511, 550
MseI	TTAA	3 cut(s)	363, 375, 495
MslI	CAYNNNNRTG	1 cut(s)	205
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	192, 277, 431
NlaIII	CATG	2 cut(s)	103, 210
NlaIV	GGNNCC	2 cut(s)	147, 313
PceI	AGGCCT	1 cut(s)	238
PflFI	GACNNNGTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	147, 313
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	192
PsyI	GACNNNGTC	1 cut(s)	518
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	3 cut(s)	363, 375, 495
Sau3AI	GATC	3 cut(s)	192, 277, 431
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	320
SduI	GDGCHC	2 cut(s)	113, 174
SetI	ASST	6 cut(s)	51, 274, 292, 409, 475, 522
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	5 cut(s)	10, 219, 265, 333, 553
SseBI	AGGCCT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	238
StyI	CCWWGG	2 cut(s)	206, 306
TaqI	TCGA	1 cut(s)	286
TasI	AATT	5 cut(s)	10, 219, 265, 333, 553
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	3 cut(s)	363, 375, 495
Tru9I	TTAA	3 cut(s)	363, 375, 495
TscAI	CASTG	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	354
Tth111I	GACNNNGTC	1 cut(s)	518
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	2 cut(s)	10, 265
XspI	CTAG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.