Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Forward (+)

17454732 .. 17455292

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1196500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGGGAAGTTCTGCGATGTCAAATGGAAGAGAAGGCACTGAAATTGACCTGTCCAAGATAACACTGAGGCCGTTGGATCTCGCGGATATTGATGATTTCATGGTATGGGGCACAGATGAGAAAGTCACAGTTTTCTGCACTTGGGAACCCTATGCTTCCAAAGAAGAAGCCCTAAACTTTATCAAGGATGTTGTCGTCCCACACCCCTGGTTTAGAGCAATCTGCCTTGACAACAGGCCAATCGGTGCCATTTCAGTAACCGCTTTCCCGGGCAATAATCGGTGCAGAGGTGAACTTGGATATGTTTTGGGGTCCAAGTACTGGGGCAAAGGGATTGCATCCCAGGCTGTGAAATTGGTGGCTGATACAATATTCAAAGAGTGGACACATTTGGATAGACTTGAAGCTCTTGTTGATGTGGACAATGTGGGATCGCAAAGGTTACTTGAGAAGGTGGGCTTTCAGAGAGAAGGTGTGCTGAGAAAATATTGTATGTTGAAGGGAAGGAGTAGGGACATGGTGATTTTCAGTCTTCTCTCTACGGATTGGCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

187

Amino Acids

20.98

Weight (kDa)

5.49

Isoelectric Point (pI)

15.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	21 - 156	3.8e-25	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	61 - 155	3.1e-12	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	86, 264
AclWI	GGATC	2 cut(s)	87, 442
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	324
AgsI	TTSAA	3 cut(s)	379, 407, 502
AjnI	CCWGG	2 cut(s)	209, 345
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
AlwI	GGATC	2 cut(s)	87, 442
Ama87I	CYCGRG	1 cut(s)	271
AoxI	GGCC	2 cut(s)	71, 239
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	272, 273
AsuHPI	GGTGA	2 cut(s)	305, 535
AvaI	CYCGRG	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	527
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	211, 347
BcnI	CCSGG	2 cut(s)	272, 273
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	4 cut(s)	211, 272, 273, 347
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	3 cut(s)	150, 250, 316
BmrFI	CCNGG	4 cut(s)	211, 272, 273, 347
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	350
BmuI	ACTGGG	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	470
BpuMI	CCSGG	2 cut(s)	272, 273
BsaJI	CCNNGG	3 cut(s)	209, 271, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	211, 347
BseDI	CCNNGG	3 cut(s)	209, 271, 345
BseGI	GGATG	2 cut(s)	196, 341
BseLI	CCNNNNNNNGG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	59, 473
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	116
BsgI	GTGCAG	2 cut(s)	124, 307
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	73, 241
BshNI	GGYRCC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	185, 530
BslI	CCNNNNNNNGG	1 cut(s)	324
BsmFI	GGGAC	2 cut(s)	185, 530
BsnI	GGCC	2 cut(s)	73, 241
BsoBI	CYCGRG	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	2 cut(s)	79, 434
BspACI	CCGC	2 cut(s)	86, 264
BspANI	GGCC	2 cut(s)	73, 241
BspCNI	CTCAG	2 cut(s)	60, 474
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	150, 250, 316
BspPI	GGATC	2 cut(s)	87, 442
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	3 cut(s)	209, 271, 345
BssMI	GATC	2 cut(s)	79, 434
Bst2UI	CCWGG	2 cut(s)	211, 347
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	68, 482
BstF5I	GGATG	2 cut(s)	196, 341
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	82, 437
BstMBI	GATC	2 cut(s)	79, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	211, 347
BstSCI	CCNGG	4 cut(s)	209, 270, 271, 345
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	73, 241
BtgZI	GCGATG	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	196, 341
BtsIMutI	CAGTG	2 cut(s)	39, 65
Cfr13I	GGNCC	1 cut(s)	315
Cfr9I	CCCGGG	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	103, 520
CviJI	RGCY	7 cut(s)	73, 173, 241, 350, 365, 410, 462
CviKI_1	RGCY	7 cut(s)	73, 173, 241, 350, 365, 410, 462
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	68, 482
DpnI	GATC	2 cut(s)	81, 436
DpnII	GATC	2 cut(s)	79, 434
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	209, 345
FaeI	CATG	2 cut(s)	106, 523
FaiI	YATR	6 cut(s)	104, 109, 156, 306, 497, 521
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FaqI	GGGAC	2 cut(s)	185, 530
FatI	CATG	2 cut(s)	102, 519
FokI	GGATG	2 cut(s)	203, 328
HaeIII	GGCC	2 cut(s)	73, 241
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	2 cut(s)	106, 523
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	305, 535
Hpy166II	GTNNAC	3 cut(s)	296, 387, 424
Hpy188I	TCNGA	1 cut(s)	468
Hpy8I	GTNNAC	3 cut(s)	296, 387, 424
HpyAV	CCTTC	5 cut(s)	29, 448, 467, 496, 501
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	141, 288, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	68, 482
Hsp92II	CATG	2 cut(s)	106, 523
Kzo9I	GATC	2 cut(s)	79, 434
LpnPI	CCDG	8 cut(s)	65, 196, 223, 223, 285, 310, 332, 359
LweI	GCATC	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	127, 259, 444
MalI	GATC	2 cut(s)	81, 436
MboI	GATC	2 cut(s)	79, 434
MboII	GAAGA	3 cut(s)	42, 179, 527
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	45, 356
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	63, 284
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	4 cut(s)	211, 272, 273, 347
MvaI	CCWGG	2 cut(s)	211, 347
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	2 cut(s)	272, 273
NdeII	GATC	2 cut(s)	79, 434
NlaIII	CATG	2 cut(s)	106, 523
NlaIV	GGNNCC	3 cut(s)	150, 250, 316
NmuCI	GTSAC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	209, 345
PspGI	CCWGG	2 cut(s)	209, 345
PspN4I	GGNNCC	3 cut(s)	150, 250, 316
PspPI	GGNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	79, 434
Sau96I	GGNCC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	323
ScrFI	CCNGG	4 cut(s)	211, 272, 273, 347
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	54, 295, 412, 446, 459, 478
SfaNI	GCATC	1 cut(s)	350
SinI	GGWCC	1 cut(s)	315
SmaI	CCCGGG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	45, 356
SsiI	CCGC	2 cut(s)	86, 264
SspI	AATATT	2 cut(s)	375, 491
StyD4I	CCNGG	4 cut(s)	209, 270, 271, 345
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	2 cut(s)	45, 356
TatI	WGTACW	1 cut(s)	321
TscAI	CASTG	2 cut(s)	46, 72
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	91
TspGWI	ACGGA	1 cut(s)	560
TspMI	CCCGGG	1 cut(s)	271
TspRI	CASTG	2 cut(s)	46, 72
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	315
XmaI	CCCGGG	1 cut(s)	271
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.