Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Forward (+)

34042017 .. 34042424

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTTCATGGTCCGGGCCACCGATGAAAAAGTGGCTCGCTTCTCGCACTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACAGGTTCTCCCACACCCCTGGTTCAGGGCAATCTGCCTAGACAACAAGCCAATTGGCTCCATTTCGGTGTCCTCAAAATCGGGGAATGATCGTTGTAGAGGTGAACTCGGCTATGTTTTGGGGTCCAAGTACCGGGGGAAAGGGATTGCAACACAAGCTGTGAAAATGGTGGCTGATACTATATTTAAAGAATGGACTCATTTGGAGAGACTTGAAGCTCTTGTTGATGTGAACAATGTGCGATCACGAGAGGGTTCGGAGAAGGCCGGTTCCCGAAGGAAGGTGTTCTCGGAAAATATGAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

135

Amino Acids

15.36

Weight (kDa)

9.76

Isoelectric Point (pI)

19.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	22 - 123	8.9e-15	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	22 - 117	5.3e-10	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	86
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	3 cut(s)	123, 231, 379
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	116
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	257, 317
AluI	AGCT	2 cut(s)	257, 317
Alw26I	GTCTC	1 cut(s)	301
AoxI	GGCC	2 cut(s)	17, 363
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	2 cut(s)	102, 383
AspS9I	GGNCC	3 cut(s)	12, 17, 222
AsuC2I	CCSGG	2 cut(s)	16, 233
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	12, 222
BauI	CACGAG	1 cut(s)	345
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	16, 233
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	137
Bme1390I	CCNGG	3 cut(s)	16, 118, 233
Bme18I	GGWCC	2 cut(s)	12, 222
BmgT120I	GGNCC	3 cut(s)	12, 17, 222
BmiI	GGNNCC	4 cut(s)	57, 157, 223, 370
BmrFI	CCNGG	3 cut(s)	16, 118, 233
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpuMI	CCSGG	2 cut(s)	16, 233
BsaJI	CCNNGG	2 cut(s)	116, 232
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 231, 379
Bse118I	RCCGGY	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	116, 232
BseLI	CCNNNNNNNGG	3 cut(s)	123, 231, 379
BshFI	GGCC	2 cut(s)	19, 365
BsiSI	CCGG	3 cut(s)	15, 232, 366
BslI	CCNNNNNNNGG	3 cut(s)	123, 231, 379
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	19, 365
Bsp143I	GATC	2 cut(s)	187, 341
BspANI	GGCC	2 cut(s)	19, 365
BspLI	GGNNCC	4 cut(s)	57, 157, 223, 370
BsrFI	RCCGGY	1 cut(s)	365
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	116, 232
BssMI	GATC	2 cut(s)	187, 341
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	39
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	190, 344
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	187, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	14, 116, 231
BstXI	CCANNNNNNTGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	19, 365
Cac8I	GCNNGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	12, 17, 222
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	1 cut(s)	9
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	2 cut(s)	189, 343
DpnII	GATC	2 cut(s)	187, 341
DraI	TTTAAA	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	12, 222
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	1 cut(s)	12
FaiI	YATR	4 cut(s)	10, 213, 281, 398
FatI	CATG	1 cut(s)	8
FspBI	CTAG	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	19, 365
HapII	CCGG	3 cut(s)	15, 232, 366
Hin1II	CATG	1 cut(s)	12
HinfI	GANTC	1 cut(s)	295
HpaII	CCGG	3 cut(s)	15, 232, 366
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	203, 331
Hpy188I	TCNGA	2 cut(s)	358, 391
Hpy188III	TCNNGA	2 cut(s)	345, 372
Hpy8I	GTNNAC	2 cut(s)	203, 331
HpyAV	CCTTC	3 cut(s)	355, 369, 373
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	187, 341
LmnI	GCTCC	2 cut(s)	55, 161
LpnPI	CCDG	8 cut(s)	28, 79, 86, 103, 109, 130, 245, 379
MaeI	CTAG	1 cut(s)	137
MalI	GATC	2 cut(s)	189, 343
MboI	GATC	2 cut(s)	187, 341
MboII	GAAGA	1 cut(s)	86
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	2 cut(s)	86, 150
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	181, 191, 343
MroXI	GAANNNNTTC	2 cut(s)	102, 383
MseI	TTAA	2 cut(s)	84, 285
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	3 cut(s)	15, 232, 366
MspR9I	CCNGG	3 cut(s)	16, 118, 233
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	2 cut(s)	16, 233
NdeII	GATC	2 cut(s)	187, 341
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	4 cut(s)	57, 157, 223, 370
NmeAIII	GCCGAG	1 cut(s)	186
PdmI	GAANNNNTTC	2 cut(s)	102, 383
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	4 cut(s)	57, 157, 223, 370
PspPI	GGNCC	3 cut(s)	12, 17, 222
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	84, 285
Sau3AI	GATC	2 cut(s)	187, 341
Sau96I	GGNCC	3 cut(s)	12, 17, 222
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	16, 118, 233
SetI	ASST	5 cut(s)	105, 202, 259, 319, 384
SinI	GGWCC	2 cut(s)	12, 222
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	86, 150
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	14, 116, 231
TasI	AATT	2 cut(s)	86, 150
Tru1I	TTAA	2 cut(s)	84, 285
Tru9I	TTAA	2 cut(s)	84, 285
TspDTI	ATGAA	2 cut(s)	41, 79
VpaK11BI	GGWCC	2 cut(s)	12, 222
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	86
XmnI	GAANNNNTTC	2 cut(s)	102, 383
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.