Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Forward (+)

24967503 .. 24968611

Gene Structure 1109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGGAAATTCTGGGATATCAAATGGAAGAGAAGGCGGTGATGAGCTCTTTACCATAACCCTCAGGCCTTTGGGTCTTTCTGACATTGATGATTTCATGGTTTGGGGCACAGATGAGAAAGTGTCTCGTTTCTGCACTTGGGAGCCTTATGCTAGCAAAGAAGAGGGGCTCAACTACATCAAGGATAAGATCCTTCCACACCCCTGGTATAGGGCAATATGTCTGGATGGCAGGCCGGTTGGTGCCATTCTAGTGACCCCGAATTCGGGAAATGATCGGTGTAGAGCTGAAATCGGCTATGTCTTGGGGTCCAAGTACTGGGGCAAAGGGATAGCTACAAGGGCAGTGAAGATGGTGGTTGATACTATTTTCAAGGAGTGGACACATTTGGAGAGACTGGAAGCTTTCGTTGATGTGGAGAACGTGGGATCACAGAGGGTGATGGAGAAGGCTGGGTTTCAAAGGGAAGGCGTTTTGAGAAAGAATTATATTGTGAAAGGTAGAACTATAGACGAGGTGGTTTTTAGTATTCTTTCCACTGAATGTGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

5.36

Isoelectric Point (pI)

17.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	20 - 155	1.2e-26	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	66 - 154	4e-13	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	321
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	187, 439
AcsI	RAATTY	2 cut(s)	10, 265
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 321
AgsI	TTSAA	2 cut(s)	376, 464
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	49, 290, 338, 407, 555
AluI	AGCT	5 cut(s)	49, 290, 338, 407, 555
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	132, 391
AlwI	GGATC	2 cut(s)	187, 439
AoxI	GGCC	2 cut(s)	68, 236
ApoI	RAATTY	2 cut(s)	10, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	53, 454
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	312
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	51, 174
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	3 cut(s)	224, 349, 439
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	132, 391
BfaI	CTAG	2 cut(s)	156, 254
BfmI	CTRYAG	1 cut(s)	510
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	3 cut(s)	147, 247, 313
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 321
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	326, 405
Bse21I	CCTNAGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 321
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	326, 405
BseSI	GKGCMC	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	70, 238
BshNI	GGYRCC	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 321
BsmAI	GTCTC	2 cut(s)	132, 391
BsnI	GGCC	2 cut(s)	70, 238
Bsp1286I	GDGCHC	3 cut(s)	51, 113, 174
Bsp143I	GATC	3 cut(s)	192, 277, 431
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	70, 238
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	147, 247, 313
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	187, 439
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	326, 405
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	192, 277, 431
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	25, 159
BstC8I	GCNNGC	2 cut(s)	157, 236
BstDEI	CTNAG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	195, 280, 434
BstMAI	GTCTC	2 cut(s)	132, 391
BstMBI	GATC	3 cut(s)	192, 277, 431
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstSFI	CTRYAG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	70, 238
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 540
Cac8I	GCNNGC	2 cut(s)	157, 236
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	194, 279, 433
DpnII	GATC	3 cut(s)	192, 277, 431
Eam1104I	CTCTTC	2 cut(s)	25, 159
EarI	CTCTTC	2 cut(s)	25, 159
Ecl136II	GAGCTC	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	51, 174
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	51, 174
FaeI	CATG	1 cut(s)	103
FaiI	YATR	8 cut(s)	59, 101, 153, 213, 223, 303, 492, 512
FatI	CATG	1 cut(s)	99
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	51, 174
FspBI	CTAG	2 cut(s)	156, 254
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	70, 238
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	405
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	2 cut(s)	53, 454
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	227, 270
Hpy8I	GTNNAC	1 cut(s)	384
HpyAV	CCTTC	4 cut(s)	29, 206, 445, 464
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	192, 277, 431
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	52, 193, 212, 220, 220, 252, 307, 386, 441
MaeI	CTAG	2 cut(s)	156, 254
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	194, 279, 433
MboI	GATC	3 cut(s)	192, 277, 431
MboII	GAAGA	3 cut(s)	42, 176, 364
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	3 cut(s)	51, 113, 174
MluCI	AATT	3 cut(s)	10, 265, 487
MnlI	CCTC	4 cut(s)	74, 160, 432, 511
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	3 cut(s)	192, 277, 431
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	147, 247, 313
NmuCI	GTSAC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	321
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	147, 247, 313
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	192, 277, 431
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	3 cut(s)	51, 113, 174
SetI	ASST	8 cut(s)	51, 292, 340, 409, 429, 505, 522, 557
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	10, 265, 487
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	156, 254
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	206
TaiI	ACGT	1 cut(s)	429
TasI	AATT	3 cut(s)	10, 265, 487
TatI	WGTACW	1 cut(s)	318
TscAI	CASTG	2 cut(s)	354, 547
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	354, 547
Van91I	CCANNNNNTGG	1 cut(s)	321
VpaK11BI	GGWCC	1 cut(s)	312
XagI	CCTNNNNNAGG	1 cut(s)	211
XapI	RAATTY	2 cut(s)	10, 265
XspI	CTAG	2 cut(s)	156, 254
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.