Rroxscaffold_5G00359500

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002623
Physical Location & Seq
Reverse (-)
39668596 .. 39669101
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359500.1

Sequence Viewer

Length: 429 bp
ATGGAGGGAAATTCTGGGATATCAAATGGAAGAGAAGGCGGTGATGAGGTCTTTACCATAACCCTCGGGCCTTTGGGTCTTTCCGACATTGATGATTTTATGGTTTGGGGCACAGATGAGAAAGTGTCTCGTTTCTGCACTTGGGAGCCTTATGCTAGCAAAGAAGAGGGGCTCAACTACATCAAGGATAAGATCCTCCCACACCCCCGAGCTGCAATCGGCTATGCCTTGGGGTCCAAGTACTGGGGCAAAGGGATAGCTACAAGGGCAGTGAAGATGGTGGTTGATACTATTTTCAAGGAGTGGACACATTTGGAGAGACCGGAAGCTTTCGTTGATGTGGAGAATGTGGGATCACGAGAGGGTGTTGGAGAAGGCCGGGTTTCAAAGGGAAGGCGTTTTGAGAAAGAATTATATTGTGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

142

Amino Acids

15.94

Weight (kDa)

5.31

Isoelectric Point (pI)

13.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 70 - 120 5.5e-09 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 243
AciI CCGC 1 cut(s) 39
AclWI GGATC 2 cut(s) 187, 361
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 243
AgsI TTSAA 2 cut(s) 298, 387
AluBI AGCT 3 cut(s) 212, 260, 329
AluI AGCT 3 cut(s) 212, 260, 329
Alw26I GTCTC 2 cut(s) 132, 313
AlwI GGATC 2 cut(s) 187, 361
Ama87I CYCGRG 2 cut(s) 65, 207
AoxI GGCC 2 cut(s) 68, 376
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 68, 234
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 53
AsuNHI GCTAGC 1 cut(s) 155
AvaI CYCGRG 2 cut(s) 65, 207
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 174
BauI CACGAG 1 cut(s) 357
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 132, 313
BfaI CTAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 234
BmeT110I CYCGRG 2 cut(s) 65, 207
BmgT120I GGNCC 2 cut(s) 68, 234
BmiI GGNNCC 2 cut(s) 147, 235
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 64, 228
BsaWI WCCGGW 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 2 cut(s) 64, 228
BseLI CCNNNNNNNGG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 1 cut(s) 199
BsgI GTGCAG 1 cut(s) 121
BshFI GGCC 2 cut(s) 70, 378
BsiHKCI CYCGRG 2 cut(s) 65, 207
BsiSI CCGG 2 cut(s) 323, 379
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 132, 313
BsnI GGCC 2 cut(s) 70, 378
Bso31I GGTCTC 1 cut(s) 313
BsoBI CYCGRG 2 cut(s) 65, 207
Bsp1286I GDGCHC 2 cut(s) 113, 174
Bsp143I GATC 2 cut(s) 192, 353
BspACI CCGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 70, 378
BspLI GGNNCC 2 cut(s) 147, 235
BspOI GCTAGC 1 cut(s) 159
BspPI GGATC 2 cut(s) 187, 361
BspTNI GGTCTC 1 cut(s) 313
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 64, 228
BssMI GATC 2 cut(s) 192, 353
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 1 cut(s) 228
Bst2BI CACGAG 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 25, 159
BstC8I GCNNGC 1 cut(s) 157
BstKTI GATC 2 cut(s) 195, 356
BstMAI GTCTC 2 cut(s) 132, 313
BstMBI GATC 2 cut(s) 192, 353
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 2 cut(s) 70, 378
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 68, 234
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 8 cut(s) 70, 148, 172, 212, 222, 260, 329, 378
CviKI_1 RGCY 8 cut(s) 70, 148, 172, 212, 222, 260, 329, 378
CviQI GTAC 1 cut(s) 241
DpnI GATC 2 cut(s) 194, 355
DpnII GATC 2 cut(s) 192, 353
Eam1104I CTCTTC 2 cut(s) 25, 159
EarI CTCTTC 2 cut(s) 25, 159
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 313
Eco32I GATATC 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 234
Eco88I CYCGRG 2 cut(s) 65, 207
EcoRV GATATC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 228
FaiI YATR 5 cut(s) 59, 101, 153, 225, 415
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 156
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 2 cut(s) 70, 378
HapII CCGG 2 cut(s) 323, 379
HindIII AAGCTT 1 cut(s) 327
HpaII CCGG 2 cut(s) 323, 379
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 306
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 1 cut(s) 306
HpyAV CCTTC 3 cut(s) 29, 368, 387
HpyCH4V TGCA 2 cut(s) 138, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Kzo9I GATC 2 cut(s) 192, 353
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 229, 336, 392
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 1 cut(s) 156
MalI GATC 2 cut(s) 194, 355
MboI GATC 2 cut(s) 192, 353
MboII GAAGA 3 cut(s) 42, 176, 286
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 113, 174
MluCI AATT 2 cut(s) 10, 410
MmeI TCCRAC 2 cut(s) 108, 349
MnlI CCTC 5 cut(s) 40, 74, 160, 206, 355
MspI CCGG 2 cut(s) 323, 379
MspR9I CCNGG 1 cut(s) 380
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 380
NdeII GATC 2 cut(s) 192, 353
NheI GCTAGC 1 cut(s) 155
NlaIV GGNNCC 2 cut(s) 147, 235
PflMI CCANNNNNTGG 1 cut(s) 243
PkrI GCNGC 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 147, 235
PspPI GGNCC 2 cut(s) 68, 234
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 192, 353
Sau96I GGNCC 2 cut(s) 68, 234
ScaI AGTACT 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 113, 174
SetI ASST 5 cut(s) 51, 214, 262, 331, 428
SinI GGWCC 1 cut(s) 234
Sse9I AATT 2 cut(s) 10, 410
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 1 cut(s) 228
TasI AATT 2 cut(s) 10, 410
TatI WGTACW 1 cut(s) 240
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 212
TspRI CASTG 1 cut(s) 276
Van91I CCANNNNNTGG 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.