Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Reverse (-)

48114729 .. 48115073

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGGAAATTCTGGGATATCAAATGGAAGAGAAGGCGGTGATGAGGTCTTTACCATAACCCTCAGGCCTTTGGGTCTTTCTGACATTGATGATTTCATGGTTTGGGGCACAGATGAGAAAGTGTCTCGTTTCTGCACTTGGGAGCCTTATGCTAGCAAAGAAGAGGGGCTCAACTACATCAAGGATAAGATCCTTCCACACCCCTGGTATAGGGCAATATGTCTGGACGGCAGGCCGGTTGGTGCCATTCTAGTGACCCCGAATTCGGGAAATGATCGGTGTAGTCGTGTAGAGCTGAAATCGGCTATGTCTTGGGGTCCAAGTACTGGGGCAAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

5.1

Isoelectric Point (pI)

23.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	329
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	10, 265
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 329
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	2 cut(s)	68, 236
ApoI	RAATTY	2 cut(s)	10, 265
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	174
BceAI	ACGGC	1 cut(s)	247
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	156, 254
BmcAI	AGTACT	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	3 cut(s)	147, 247, 321
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	339
BmtI	GCTAGC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 329
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	334
Bse21I	CCTNAGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 329
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	334
BseSI	GKGCMC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	70, 238
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	4 cut(s)	213, 268, 269, 329
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	70, 238
Bsp1286I	GDGCHC	2 cut(s)	113, 174
Bsp143I	GATC	2 cut(s)	192, 277
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	70, 238
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	147, 247, 321
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	192, 277
Bst2UI	CCWGG	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	25, 159
BstC8I	GCNNGC	2 cut(s)	157, 236
BstDEI	CTNAG	1 cut(s)	65
BstENI	CCTNNNNNAGG	1 cut(s)	211
BstKTI	GATC	2 cut(s)	195, 280
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	192, 277
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	70, 238
Cac8I	GCNNGC	2 cut(s)	157, 236
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	70, 148, 172, 238, 298, 308
CviKI_1	RGCY	6 cut(s)	70, 148, 172, 238, 298, 308
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	194, 279
DpnII	GATC	2 cut(s)	192, 277
Eam1104I	CTCTTC	2 cut(s)	25, 159
EarI	CTCTTC	2 cut(s)	25, 159
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	320
Eco81I	CCTNAGG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	1 cut(s)	103
FaiI	YATR	6 cut(s)	59, 101, 153, 213, 223, 311
FatI	CATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	2 cut(s)	156, 254
HaeIII	GGCC	2 cut(s)	70, 238
HapII	CCGG	1 cut(s)	239
Hin1II	CATG	1 cut(s)	103
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	227, 270
HpyAV	CCTTC	2 cut(s)	29, 206
HpyCH4V	TGCA	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	192, 277
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	7 cut(s)	52, 193, 212, 220, 220, 252, 315
MaeI	CTAG	2 cut(s)	156, 254
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	2 cut(s)	194, 279
MboI	GATC	2 cut(s)	192, 277
MboII	GAAGA	2 cut(s)	42, 176
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	113, 174
MluCI	AATT	2 cut(s)	10, 265
MnlI	CCTC	3 cut(s)	40, 74, 160
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
NdeII	GATC	2 cut(s)	192, 277
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	147, 247, 321
NmuCI	GTSAC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	147, 247, 321
PspPI	GGNCC	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	254
Sau3AI	GATC	2 cut(s)	192, 277
Sau96I	GGNCC	1 cut(s)	320
ScaI	AGTACT	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	2 cut(s)	113, 174
SetI	ASST	2 cut(s)	51, 300
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	10, 265
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	156, 254
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	206
TasI	AATT	2 cut(s)	10, 265
TatI	WGTACW	1 cut(s)	326
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	88
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	320
XagI	CCTNNNNNAGG	1 cut(s)	211
XapI	RAATTY	2 cut(s)	10, 265
XspI	CTAG	2 cut(s)	156, 254
ZrmI	AGTACT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.