Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Reverse (-)

43617455 .. 43617994

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGGAAGTTCTAGCAGTGATGAGTTGTCCAAGATCAGCCTGAGGCCATTGGCTCTTTCGGACATCGATGATTTCATGGTCTGGGCCACTGATGAAAAAGTGCCTCGCTTCTGCACTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACAGGTTCTCCCACACCCCTGGTTCAGGGCAATCTGCCTAGACAACAAGCCAATTGGCGCCATTTCGGTGTCCTCAAAATCGGGGAATGATCGTTGTAGAGGTGAACTCGGCTATGTTTTGGGGTCCAAGTACTGGGGGAAAGGGATTGCAACACAAGCTGTGAAAATGGTGGCTGATACTATATTTAAAGAATGGACTCATTTGGAGAGACTTGAAGCTCTTGTTGATGTGAACAATGTGCGATCACAGAGGGTTCTGGAGAAGGCCGGGTTCCTGAAGGAAGGTGTTCTCAGAAAATATGAAGTTTTGAAGGGAAGAGCTTGGGATATAGTGATGTATAGTCTTCTTTCTACAGATCGATGTCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

179

Amino Acids

20.34

Weight (kDa)

7.63

Isoelectric Point (pI)

13.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	13 - 147	4.8e-26	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	41 - 147	2.2e-12	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	192, 300
AgsI	TTSAA	2 cut(s)	383, 478
AjnI	CCWGG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	3 cut(s)	326, 386, 488
AluI	AGCT	3 cut(s)	326, 386, 488
Alw26I	GTCTC	1 cut(s)	370
AoxI	GGCC	3 cut(s)	47, 87, 432
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	2 cut(s)	171, 453
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	87, 291
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	291
AxyI	CCTNAGG	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	503
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	15, 206
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	228
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	187, 436
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	2 cut(s)	87, 291
BmiI	GGNNCC	4 cut(s)	126, 226, 292, 440
BmrFI	CCNGG	2 cut(s)	187, 436
BmrI	ACTGGG	1 cut(s)	310
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	503
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	436
Bsa29I	ATCGAT	2 cut(s)	69, 526
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 300
Bse1I	ACTGG	1 cut(s)	305
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	187
BseCI	ATCGAT	2 cut(s)	69, 526
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	192, 300
BseMII	CTCAG	2 cut(s)	35, 472
BseNI	ACTGG	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	49, 89, 434
BshNI	GGYRCC	1 cut(s)	224
BshVI	ATCGAT	2 cut(s)	69, 526
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	192, 300
BsmAI	GTCTC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	49, 89, 434
Bsp143I	GATC	4 cut(s)	36, 256, 410, 523
BspANI	GGCC	3 cut(s)	49, 89, 434
BspCNI	CTCAG	2 cut(s)	36, 471
BspDI	ATCGAT	2 cut(s)	69, 526
BspLI	GGNNCC	4 cut(s)	126, 226, 292, 440
BspQI	GCTCTTC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	4 cut(s)	36, 256, 410, 523
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	44, 458
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	4 cut(s)	39, 259, 413, 526
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	4 cut(s)	36, 256, 410, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	185, 434
BstSFI	CTRYAG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	186
Bsu15I	ATCGAT	2 cut(s)	69, 526
Bsu36I	CCTNAGG	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	49, 89, 434
BsuTUI	ATCGAT	2 cut(s)	69, 526
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 90
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	87, 291
ClaI	ATCGAT	2 cut(s)	69, 526
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	44, 458
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	4 cut(s)	38, 258, 412, 525
DpnII	GATC	4 cut(s)	36, 256, 410, 523
DraI	TTTAAA	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	464
Eco81I	CCTNAGG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	1 cut(s)	82
FaiI	YATR	6 cut(s)	80, 282, 350, 468, 497, 507
FatI	CATG	1 cut(s)	78
FspBI	CTAG	2 cut(s)	15, 206
GlaI	GCGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	446
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	49, 89, 434
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	272, 400
Hpy188I	TCNGA	2 cut(s)	64, 461
Hpy188III	TCNNGA	2 cut(s)	425, 442
Hpy8I	GTNNAC	2 cut(s)	272, 400
HpyAV	CCTTC	4 cut(s)	424, 439, 443, 472
HpyCH4V	TGCA	2 cut(s)	117, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	44, 458
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	4 cut(s)	36, 256, 410, 523
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	15, 206
MalI	GATC	4 cut(s)	38, 258, 412, 525
MboI	GATC	4 cut(s)	36, 256, 410, 523
MboII	GAAGA	3 cut(s)	155, 495, 503
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	2 cut(s)	155, 219
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	5 cut(s)	39, 117, 250, 260, 411
MroXI	GAANNNNTTC	2 cut(s)	171, 453
MseI	TTAA	2 cut(s)	153, 354
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	187, 436
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	323
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	4 cut(s)	36, 256, 410, 523
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	126, 226, 292, 440
NmeAIII	GCCGAG	1 cut(s)	255
PciSI	GCTCTTC	1 cut(s)	478
PdmI	GAANNNNTTC	2 cut(s)	171, 453
PflMI	CCANNNNNTGG	1 cut(s)	300
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	4 cut(s)	126, 226, 292, 440
PspPI	GGNCC	2 cut(s)	87, 291
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	2 cut(s)	153, 354
Sau3AI	GATC	4 cut(s)	36, 256, 410, 523
Sau96I	GGNCC	2 cut(s)	87, 291
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	187, 436
SetI	ASST	6 cut(s)	174, 271, 328, 388, 454, 490
SfcI	CTRYAG	1 cut(s)	519
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	155, 219
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	15, 206
StyD4I	CCNGG	2 cut(s)	185, 434
TaqI	TCGA	2 cut(s)	69, 526
TasI	AATT	2 cut(s)	155, 219
TatI	WGTACW	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	153, 354
Tru9I	TTAA	2 cut(s)	153, 354
TscAI	CASTG	2 cut(s)	25, 97
TspDTI	ATGAA	4 cut(s)	67, 111, 148, 483
TspRI	CASTG	2 cut(s)	25, 97
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	155
XmnI	GAANNNNTTC	2 cut(s)	171, 453
XspI	CTAG	2 cut(s)	15, 206
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.