Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Forward (+)

24956865 .. 24957410

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGGAAGTTCTAGCAGTGATGAGTTGTCCAAGATCAGCCTGAGGCCATTGGCTCTTTCGGACATCGATGATTTCATGGTCTGGGCCACTGATGAAAAAGCGGCTCGCTTCTGCACTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACTGGTTCTCCCACACCCCTGGTTCAGGGCAATCTGCCTAGACAACAAGCCAATTGGCGCCATTTCGGTATCCTCACAATCGGGGAATGATCGTTGTAGAGGTAAACTCGGCTATGTTTTGGGGTCCAAGTACTGGAGGAAAGGGATTGCAACACAAGCTGTGAAAATGGTGGCTGATACTATATTTAAAGAATGGACTCATTTGGAGAGACTTGAAGCTCTTGTTGATGTGAACAATGTGGGATCACAGAGGGTTCTGGAGAAGGCCGGGTTCCAGAAGGAAGGTGTTCTCAGAAAATATATAGTTTTGAAGGGAAGAACTTGTGATATGGTGACGTATAGTCTTCTTTCTACAGATAGATGTCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

180

Amino Acids

20.2

Weight (kDa)

8.56

Isoelectric Point (pI)

13.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	13 - 148	1.6e-24	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	18 - 167	6.8e-06	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	42 - 147	4.7e-11	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	300
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	192, 300
AgsI	TTSAA	2 cut(s)	383, 478
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	185
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	2 cut(s)	326, 386
AluI	AGCT	2 cut(s)	326, 386
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	3 cut(s)	47, 87, 432
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	2 cut(s)	171, 453
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	87, 291
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	291
AxyI	CCTNAGG	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	503
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	187
BciVI	GTATCC	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	15, 206
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	2 cut(s)	187, 436
Bme18I	GGWCC	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	2 cut(s)	87, 291
BmiI	GGNNCC	4 cut(s)	126, 226, 292, 440
BmrFI	CCNGG	2 cut(s)	187, 436
BpiI	GAAGAC	1 cut(s)	503
BplI	GAGNNNNNCTC	2 cut(s)	258, 290
BpmI	CTGGAG	2 cut(s)	322, 446
BpuMI	CCSGG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 300
Bse1I	ACTGG	2 cut(s)	174, 305
Bse21I	CCTNAGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	187
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	192, 300
BseMII	CTCAG	2 cut(s)	35, 472
BseNI	ACTGG	2 cut(s)	174, 305
BsgI	GTGCAG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	49, 89, 434
BshNI	GGYRCC	1 cut(s)	224
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	192, 300
BsmAI	GTCTC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	49, 89, 434
Bsp143I	GATC	3 cut(s)	36, 256, 410
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	49, 89, 434
BspCNI	CTCAG	2 cut(s)	36, 471
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	126, 226, 292, 440
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	174, 305
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	3 cut(s)	36, 256, 410
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	44, 458
BstENI	CCTNNNNNAGG	1 cut(s)	190
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	3 cut(s)	39, 259, 413
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	36, 256, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	2 cut(s)	185, 434
BstSFI	CTRYAG	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	44
BsuI	GTATCC	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	49, 89, 434
BsuTUI	ATCGAT	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 90
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	87, 291
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	79
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	44, 458
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	3 cut(s)	38, 258, 412
DpnII	GATC	3 cut(s)	36, 256, 410
DraI	TTTAAA	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1105I	GACNNNNNGTC	1 cut(s)	507
Eco47I	GGWCC	1 cut(s)	291
Eco81I	CCTNAGG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	185
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	1 cut(s)	82
FaiI	YATR	7 cut(s)	80, 282, 350, 468, 470, 497, 507
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	15, 206
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	322, 446
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	49, 89, 434
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	272, 400
Hpy188I	TCNGA	2 cut(s)	64, 461
Hpy188III	TCNNGA	2 cut(s)	425, 442
Hpy8I	GTNNAC	2 cut(s)	272, 400
HpyAV	CCTTC	4 cut(s)	424, 439, 443, 472
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	2 cut(s)	117, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	44, 458
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	82
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	36, 256, 410
LmnI	GCTCC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	15, 206
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	3 cut(s)	38, 258, 412
MboI	GATC	3 cut(s)	36, 256, 410
MboII	GAAGA	3 cut(s)	155, 495, 503
MfeI	CAATTG	1 cut(s)	219
MluCI	AATT	2 cut(s)	155, 219
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	358
MnlI	CCTC	5 cut(s)	39, 250, 260, 297, 411
MroXI	GAANNNNTTC	2 cut(s)	171, 453
MseI	TTAA	3 cut(s)	153, 354, 538
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	187, 436
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	323
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	3 cut(s)	36, 256, 410
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	4 cut(s)	126, 226, 292, 440
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	499
PdmI	GAANNNNTTC	2 cut(s)	171, 453
PflMI	CCANNNNNTGG	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	4 cut(s)	126, 226, 292, 440
PspPI	GGNCC	2 cut(s)	87, 291
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	153, 354, 538
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	36, 256, 410
Sau96I	GGNCC	2 cut(s)	87, 291
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	187, 436
SetI	ASST	5 cut(s)	271, 328, 388, 454, 506
SfcI	CTRYAG	1 cut(s)	519
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	2 cut(s)	155, 219
SsiI	CCGC	1 cut(s)	104
SspDI	GGCGCC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	15, 206
StyD4I	CCNGG	2 cut(s)	185, 434
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	155, 219
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	153, 354, 538
Tru9I	TTAA	3 cut(s)	153, 354, 538
TscAI	CASTG	2 cut(s)	25, 97
TseFI	GTSAC	1 cut(s)	499
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	67, 111, 148
TspRI	CASTG	2 cut(s)	25, 97
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	155
XmnI	GAANNNNTTC	2 cut(s)	171, 453
XspI	CTAG	2 cut(s)	15, 206
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.