MD13G1195600.v1.1

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0002623
Physical Location & Seq
Forward (+)
17029856 .. 17030077
222 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1195600.v1.1.491

Sequence Viewer

Length: 222 bp
ATGCCAATCGGTTCCATTTCTGTGACCCCTTTCTCGGGCAATAATCGGTGCAGAGGTGAACTTGGATACGTTTTGGGGTCCAAGTACTGGGGCAAGGGAATTGCGACCCAGGCTGTGAAATTGGTGGCTGATGCTATATTCAAAGAGTGGCCACATTTGGATAGACTTGAAGCTCTTGTTGACGTGGACAATGCGGGATCACAATTCACGAAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

74

Amino Acids

7.91

Weight (kDa)

6.53

Isoelectric Point (pI)

-4.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 2 - 68 7.3e-07 Acetyltransferase (GNAT) family
Acetyltransf_3 PF13302 3 - 68 6.1e-14 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 87
AciI CCGC 1 cut(s) 194
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 149
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 3 cut(s) 34, 35, 87
AgsI TTSAA 2 cut(s) 142, 170
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 110
BciVI GTATCC 1 cut(s) 59
BfuI GTATCC 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 34
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 13, 79
BmrFI CCNGG 1 cut(s) 110
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 121, 205
BmuI ACTGGG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 35, 87
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 3 cut(s) 34, 35, 87
BseNI ACTGG 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 70
BshFI GGCC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 34
BslI CCNNNNNNNGG 3 cut(s) 34, 35, 87
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 1 cut(s) 197
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 13, 79
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 1 cut(s) 200
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 151
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 85
CviJI RGCY 4 cut(s) 113, 128, 151, 173
CviKI_1 RGCY 4 cut(s) 113, 128, 151, 173
CviQI GTAC 1 cut(s) 85
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 108
FaiI YATR 1 cut(s) 137
FauI CCCGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 59, 181, 187
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 3 cut(s) 59, 181, 187
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 2 cut(s) 69, 183
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 69, 183
Kzo9I GATC 1 cut(s) 197
LpnPI CCDG 3 cut(s) 73, 95, 122
LweI GCATC 2 cut(s) 121, 205
MaeII ACGT 2 cut(s) 69, 183
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 151
MluCI AATT 3 cut(s) 99, 119, 203
MluNI TGGCCA 1 cut(s) 151
MnlI CCTC 1 cut(s) 47
Mox20I TGGCCA 1 cut(s) 151
MscI TGGCCA 1 cut(s) 151
MslI CAYNNNNRTG 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 1 cut(s) 197
NlaIV GGNNCC 2 cut(s) 13, 79
NmuCI GTSAC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 13, 79
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 20
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 78
ScaI AGTACT 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 110
SetI ASST 4 cut(s) 58, 72, 175, 186
SfaNI GCATC 2 cut(s) 121, 205
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 99, 119, 203
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 108
TaiI ACGT 2 cut(s) 72, 186
TasI AATT 3 cut(s) 99, 119, 203
TatI WGTACW 1 cut(s) 84
TseFI GTSAC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 22
Van91I CCANNNNNTGG 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.