Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Forward (+)

17446001 .. 17446530

Gene Structure 530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1196400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAAGAGAAGGCAGGCACATGTGAGAAAGTCCTAGTTTTTTGCCCTTGGGAACCTTATGCCTCCAAAGAAGAAGCCCTAGACTATATCAAGGATGTTATCATCCTGCACCCTTGGTTCAGGGCAATCTGCCTTAACAACAGGCCAATTGGTTACATTTTGGTGACCGCTTTCTTAGGCAATGATCGGTGCAGAGTTGAAATTGGATATGCTTTGGGGTCCAAGTACTGGGGCAAATGGATTGCAACTGTGAAATTGGTGGCTGATGACATATTCAAGGAGTGGACACATATGGAGAGACTCGAAGCTTTTGTTGATGTGGACAATGTGGGATCGCAAAGGGTGCTTCAAAAGGTAGGGTTTCAAAGAGAATGTGTGCTGGGAAAATATTTTATTTTGAAGGGAAGATGTAGTGACATGGTGATTTTCAATCTTCTATCTACCGATTGGAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

153

Amino Acids

17.62

Weight (kDa)

7.56

Isoelectric Point (pI)

14.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	14 - 122	2.2e-14	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	37 - 121	2.4e-06	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	6 cut(s)	200, 277, 350, 365, 400, 430
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	175, 433
AvaII	GGWCC	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	35, 80
BmcAI	AGTACT	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	54, 220
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	47, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	47, 113
BseGI	GGATG	2 cut(s)	100, 102
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	379
BsgI	GTGCAG	2 cut(s)	92, 211
BshFI	GGCC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	184, 332
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	54, 220
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	47, 113
BssMI	GATC	2 cut(s)	184, 332
BssT1I	CCWWGG	2 cut(s)	47, 113
Bst4CI	ACNGT	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	100, 102
BstKTI	GATC	2 cut(s)	187, 335
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	184, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	24
BstPI	GGTNACC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	100, 102
Cac8I	GCNNGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	21, 418
CviJI	RGCY	4 cut(s)	77, 145, 263, 308
CviKI_1	RGCY	4 cut(s)	77, 145, 263, 308
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	186, 334
DpnII	GATC	2 cut(s)	184, 332
Eco130I	CCWWGG	2 cut(s)	47, 113
Eco47I	GGWCC	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	47, 113
ErhI	CCWWGG	2 cut(s)	47, 113
FaeI	CATG	2 cut(s)	24, 421
FaiI	YATR	8 cut(s)	22, 60, 87, 210, 272, 291, 293, 419
FatI	CATG	2 cut(s)	20, 417
FauNDI	CATATG	1 cut(s)	291
FokI	GGATG	2 cut(s)	89, 107
FspBI	CTAG	2 cut(s)	35, 80
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	24, 421
HindIII	AAGCTT	1 cut(s)	306
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	2 cut(s)	175, 433
Hpy166II	GTNNAC	2 cut(s)	285, 322
Hpy8I	GTNNAC	2 cut(s)	285, 322
HpyAV	CCTTC	2 cut(s)	4, 394
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	109, 192, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	24, 421
Kzo9I	GATC	2 cut(s)	184, 332
LpnPI	CCDG	5 cut(s)	106, 119, 127, 214, 365
MaeI	CTAG	2 cut(s)	35, 80
MaeIII	GTNAC	3 cut(s)	152, 163, 413
MalI	GATC	2 cut(s)	186, 334
MboI	GATC	2 cut(s)	184, 332
MboII	GAAGA	3 cut(s)	83, 417, 425
MfeI	CAATTG	1 cut(s)	147
MluCI	AATT	3 cut(s)	147, 201, 254
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	1 cut(s)	73
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	2 cut(s)	184, 332
NlaIII	CATG	2 cut(s)	24, 421
NlaIV	GGNNCC	2 cut(s)	54, 220
NmuCI	GTSAC	2 cut(s)	163, 413
NspI	RCATGY	1 cut(s)	24
PciI	ACATGT	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	228
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	54, 220
PspPI	GGNCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	184, 332
Sau96I	GGNCC	1 cut(s)	219
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	294
SetI	ASST	3 cut(s)	58, 310, 357
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	147, 201, 254
SsiI	CCGC	1 cut(s)	168
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	2 cut(s)	35, 80
StyI	CCWWGG	2 cut(s)	47, 113
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	147, 201, 254
TatI	WGTACW	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	163, 413
Tsp45I	GTSAC	2 cut(s)	163, 413
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	219
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	2 cut(s)	35, 80
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.