FvH4_4g26600

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002623
Physical Location & Seq
Reverse (-)
27925856 .. 27927160
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26600.t1

Sequence Viewer

Length: 543 bp
ATGGAGGGAAGTTGTAGCAGTGAGGAGTACTTGTCCAAGATCAGCCTTAGGCCTTTGGGTGTTTCAGACATTGATGACGTCATGGTCTGGGCCAGCGATGAGAAAGTTGTTCTCTTCTGCACTTGGGAGGCTTATACCAACAAAGAAGATGGCATTAAATTCATCAAGGAGCATGTTGTCCCACACCCCTGGTTCAGGGCAATCTGCCTTGACAACAAGCCAATTGGTGCCATTTCGATATGCACGAAACCAGGGAATGATAGTTGCAGAGGTGAACTCGGCTATGTTTTGGGGTCTAAGTACTGGGGGAAGGGGATTGCAACAAGGGCTGTGAGAATTGTGGCCGATACAATTTTTAAGGAGTGGGCTCATCTGGAGAGACTAGAAGCTCTTGTTGATGTGAACAATGTGGGATCACAGAGGGTTCTGGAGAAGGCCGGGTTCCAGAAGGAAGGTGTTCTCAGAAAGTATGTAGTTCTGAAGGGAAGAACTTGTGATATGGTGATGTATAGTCTTCTTCCTTCAGATCAATGTCATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

181

Amino Acids

20.22

Weight (kDa)

6.43

Isoelectric Point (pI)

19.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 14 - 149 1.3e-23 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 56 - 148 7.5e-12 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 227
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 500, 507
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 29, 302
AfiI CCNNNNNNNGG 1 cut(s) 195
AjnI CCWGG 2 cut(s) 188, 250
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 1 cut(s) 421
AoxI GGCC 4 cut(s) 50, 90, 342, 435
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 284, 514
AxyI CCTNAGG 1 cut(s) 47
BanI GGYRCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 506
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 190, 252
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 383
BmcAI AGTACT 2 cut(s) 29, 302
Bme1390I CCNGG 3 cut(s) 190, 252, 439
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 229, 443
BmrFI CCNGG 3 cut(s) 190, 252, 439
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 506
BplI GAGNNNNNCTC 2 cut(s) 261, 293
BpmI CTGGAG 2 cut(s) 395, 449
BpuMI CCSGG 1 cut(s) 439
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 188, 251
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 47
BseBI CCWGG 2 cut(s) 190, 252
BseDI CCNNGG 2 cut(s) 188, 251
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 475
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 4 cut(s) 52, 92, 344, 437
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 4 cut(s) 52, 92, 344, 437
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 39, 413, 526
BspANI GGCC 4 cut(s) 52, 92, 344, 437
BspCNI CTCAG 1 cut(s) 474
BspLI GGNNCC 2 cut(s) 229, 443
BspPI GGATC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 188, 251
BssMI GATC 3 cut(s) 39, 413, 526
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 190, 252
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 3 cut(s) 47, 297, 461
BstENI CCTNNNNNAGG 1 cut(s) 193
BstKTI GATC 3 cut(s) 42, 416, 529
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 3 cut(s) 39, 413, 526
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 2 cut(s) 190, 252
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 3 cut(s) 188, 250, 437
BstV2I GAAGAC 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 47
BsuRI GGCC 4 cut(s) 52, 92, 344, 437
BtgZI GCGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 28, 301
CviAII CATG 2 cut(s) 82, 173
CviQI GTAC 2 cut(s) 28, 301
DdeI CTNAG 3 cut(s) 47, 297, 461
DpnI GATC 3 cut(s) 41, 415, 528
DpnII GATC 3 cut(s) 39, 413, 526
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 500, 507
Eco81I CCTNAGG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 188, 250
EcoT38I GRGCYC 1 cut(s) 370
FaeI CATG 2 cut(s) 85, 176
FaiI YATR 9 cut(s) 83, 135, 174, 241, 285, 471, 500, 510, 537
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 81, 172
FriOI GRGCYC 1 cut(s) 370
FspBI CTAG 1 cut(s) 383
GsuI CTGGAG 2 cut(s) 395, 449
HaeIII GGCC 4 cut(s) 52, 92, 344, 437
HapII CCGG 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 85, 176
HpaII CCGG 1 cut(s) 438
HphI GGTGA 2 cut(s) 284, 514
Hpy166II GTNNAC 2 cut(s) 275, 403
Hpy188I TCNGA 4 cut(s) 67, 464, 480, 526
Hpy188III TCNNGA 3 cut(s) 374, 428, 445
Hpy8I GTNNAC 2 cut(s) 275, 403
HpyAV CCTTC 6 cut(s) 304, 427, 442, 446, 475, 531
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 120, 243, 267, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 47, 297, 461
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 85, 176
Kzo9I GATC 3 cut(s) 39, 413, 526
LmnI GCTCC 1 cut(s) 169
MaeI CTAG 1 cut(s) 383
MaeII ACGT 1 cut(s) 78
MalI GATC 3 cut(s) 41, 415, 528
MboI GATC 3 cut(s) 39, 413, 526
MboII GAAGA 5 cut(s) 106, 158, 498, 506, 509
MfeI CAATTG 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 4 cut(s) 158, 222, 336, 351
MnlI CCTC 4 cut(s) 16, 121, 263, 414
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 2 cut(s) 156, 357
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 3 cut(s) 190, 252, 439
MunI CAATTG 1 cut(s) 222
MvaI CCWGG 2 cut(s) 190, 252
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 439
NdeII GATC 3 cut(s) 39, 413, 526
NlaIII CATG 2 cut(s) 85, 176
NlaIV GGNNCC 2 cut(s) 229, 443
NmeAIII GCCGAG 1 cut(s) 258
NspI RCATGY 1 cut(s) 176
PceI AGGCCT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 188, 250
PspGI CCWGG 2 cut(s) 188, 250
PspN4I GGNNCC 2 cut(s) 229, 443
PspPI GGNCC 1 cut(s) 90
RsaI GTAC 2 cut(s) 29, 302
RsaNI GTAC 2 cut(s) 28, 301
SaqAI TTAA 2 cut(s) 156, 357
Sau3AI GATC 3 cut(s) 39, 413, 526
Sau96I GGNCC 1 cut(s) 90
ScaI AGTACT 2 cut(s) 29, 302
ScrFI CCNGG 3 cut(s) 190, 252, 439
SduI GDGCHC 1 cut(s) 370
SetI ASST 4 cut(s) 81, 274, 391, 457
Sse9I AATT 4 cut(s) 158, 222, 336, 351
SseBI AGGCCT 1 cut(s) 52
SspMI CTAG 1 cut(s) 383
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 3 cut(s) 188, 250, 437
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 236
TasI AATT 4 cut(s) 158, 222, 336, 351
TatI WGTACW 2 cut(s) 27, 300
Tru1I TTAA 2 cut(s) 156, 357
Tru9I TTAA 2 cut(s) 156, 357
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 151
TspRI CASTG 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 1 cut(s) 383
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 2 cut(s) 29, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.