Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002623

Physical Location & Seq

Genomic Coordinates Reverse (-)

20029723 .. 20030187

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGTGGGCAACCGATGAGAAAGTCCCTCGCTTCTGCATTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACATGTTCTCCCACACCCCTGGTTCAGGGCAATCTGCCTTGACAACAAGCCAATTGGCGCAATTTCGGTAGGCTCAAAATCGGGGATTGATCGTTGTAGAGATGAACTCGGCTATGTTTTGGGGTCCAAGTACTGGGGGAAGGGGATTGCAACAAGGGCTGTGAAAATTGTAGCCCATACTATTTTTAAGGAGTGGACACATTTAAAGAGACTAGAAGCTCATGTTGATGTGAATAATGTGGGATCACAAAGAGTTTTGGAGAAGGCCGGGTTCCAGAAGGAGGGTGTTCTCAGGAAGTATTTAGTTTTGAAGGGAAGAACTTGGGATGTAGTGATGTATAGTCTTCTTTCTACAGATCAATGTCCGACTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_3

Protein Analysis

155

Amino Acids

17.63

Weight (kDa)

9.3

Isoelectric Point (pI)

2.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	3 - 122	1.3e-19	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	29 - 121	2.1e-11	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32020 AT2G32030
fragaria_vesca	FvH4_4g16130 FvH4_4g16140 FvH4_4g26600
malus_domestica	MD13G1195600.v1.1 MD16G1196400.v1.1 MD16G1196500.v1.1
prunus_persica	Prupe.1G016600_v2.0.a1 Prupe.1G016700_v2.0.a1
pyrus_communis	pycom13g16790
rosa_chinensis	RchiOBHm_Chr4g0415651 RchiOBHm_Chr4g0415661 RchiOBHm_Chr4g0415691
rosa_laevigata	RLG00000008050 RLG00000008051 RLG00000008052
rosa_multiflora	Rmu_co8195074.1_g000001 Rmu_sc0004536.1_g000001 Rmu_sc0004536.1_g000002 Rmu_sc0004540.1_g000030
rosa_roxburghii	Rroxscaffold_5G00355360 Rroxscaffold_5G00355390 Rroxscaffold_5G00359480 Rroxscaffold_5G00359500
rosa_rugosa	Rorug04G0113500 Rorug04G0113500 Rorug04G0136100 Rorug04G0136200
rosa_samantha	Rh4AG197000 Rh4AG197100 Rh4BG195500 Rh4BG195600 Rh4CG207700 Rh4CG207900 Rh4CG208200 Rh4DG194800 Rh4DG194900
rosa_wichuraiana	Rw4G016750 Rw4G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	222
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	114, 222, 370
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	107
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	77
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	213
AsuC2I	CCSGG	1 cut(s)	358
AvaII	GGWCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	425
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	109, 358
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	48, 214, 362
BmrFI	CCNGG	2 cut(s)	109, 358
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	425
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BpuMI	CCSGG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 222, 370
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	3 cut(s)	114, 222, 370
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	3 cut(s)	114, 222, 370
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	178, 332, 445
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	3 cut(s)	48, 214, 362
BspPI	GGATC	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	3 cut(s)	178, 332, 445
Bst2UI	CCWGG	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	380, 459
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	181, 335, 448
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	3 cut(s)	178, 332, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	107, 356
BstSFI	CTRYAG	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	421
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	92, 311
CviJI	RGCY	8 cut(s)	49, 139, 162, 201, 248, 263, 308, 356
CviKI_1	RGCY	8 cut(s)	49, 139, 162, 201, 248, 263, 308, 356
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	380, 459
DpnI	GATC	3 cut(s)	180, 334, 447
DpnII	GATC	3 cut(s)	178, 332, 445
DraI	TTTAAA	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	95, 314
FaiI	YATR	5 cut(s)	93, 204, 267, 312, 429
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	91, 310
FokI	GGATG	1 cut(s)	428
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	357
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	95, 314
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	364, 382
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	4 cut(s)	223, 346, 361, 394
HpyCH4V	TGCA	2 cut(s)	39, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	2 cut(s)	380, 459
Hsp92II	CATG	2 cut(s)	95, 314
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	178, 332, 445
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	70, 94, 100, 121, 208, 367, 370, 377
MaeI	CTAG	1 cut(s)	302
MalI	GATC	3 cut(s)	180, 334, 447
MboI	GATC	3 cut(s)	178, 332, 445
MboII	GAAGA	3 cut(s)	77, 417, 425
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	4 cut(s)	77, 141, 150, 255
MlyI	GAGTC	1 cut(s)	451
MnlI	CCTC	2 cut(s)	39, 364
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	3 cut(s)	75, 276, 293
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	109, 358
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	3 cut(s)	178, 332, 445
NlaIII	CATG	2 cut(s)	95, 314
NlaIV	GGNNCC	3 cut(s)	48, 214, 362
NmeAIII	GCCGAG	1 cut(s)	177
NspI	RCATGY	1 cut(s)	95
PciI	ACATGT	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	93
PflMI	CCANNNNNTGG	1 cut(s)	222
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PscI	ACATGT	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	48, 214, 362
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	75, 276, 293
Sau3AI	GATC	3 cut(s)	178, 332, 445
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	109, 358
SetI	ASST	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	4 cut(s)	77, 141, 150, 255
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	107, 356
TasI	AATT	4 cut(s)	77, 141, 150, 255
TatI	WGTACW	1 cut(s)	219
Tru1I	TTAA	3 cut(s)	75, 276, 293
Tru9I	TTAA	3 cut(s)	75, 276, 293
TspDTI	ATGAA	2 cut(s)	70, 207
Van91I	CCANNNNNTGG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	213
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.