Rroxscaffold_5G00355360

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002623
Physical Location & Seq
Forward (+)
34020934 .. 34021398
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355360.1

Sequence Viewer

Length: 375 bp
ATGGAGGGAAGTTCTAGCAGTGATGAGTTGTCCAAGATCAGCTCGAGGCCATTGGCTCTTTCGGACATCGATGATTTCATGGTCGGGCCACCGATGAAAAAGTGGCTCGCTCGCACTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACAGGTTCTCCCACACCCCCGGTTCGGGGCAATCTGCCTAGACAACAAGCCAATTGGCTCCATTTCGGTGTCCTCAAAATCGGGGAATGATCGTTGTAGAGAATGGACTCATTTGGAGAGACTTGAAGCTCTTGTTGATGTGAACAATGTGCGATCACGGAGGGTTGGAGAAGGCCGGGTTCTGAAGGAAGGTGTTCTCGAGAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

124

Amino Acids

13.95

Weight (kDa)

7.78

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 188, 189, 190
AgsI TTSAA 1 cut(s) 290
AloI GAACNNNNNNTCC 2 cut(s) 156, 188
AluBI AGCT 2 cut(s) 42, 293
AluI AGCT 2 cut(s) 42, 293
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 43, 362
AoxI GGCC 3 cut(s) 47, 86, 337
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 2 cut(s) 168, 357
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 184, 341
AvaI CYCGRG 2 cut(s) 43, 362
BccI CCATC 1 cut(s) 137
BcnI CCSGG 2 cut(s) 184, 341
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 15, 203
Bme1390I CCNGG 2 cut(s) 184, 341
BmeT110I CYCGRG 2 cut(s) 43, 362
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 123, 223
BmrFI CCNGG 2 cut(s) 184, 341
BpuMI CCSGG 2 cut(s) 184, 341
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 189, 190
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 188, 189, 190
BshFI GGCC 3 cut(s) 49, 88, 339
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 2 cut(s) 43, 362
BsiSI CCGG 2 cut(s) 184, 340
BslI CCNNNNNNNGG 3 cut(s) 188, 189, 190
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 3 cut(s) 49, 88, 339
BsoBI CYCGRG 2 cut(s) 43, 362
Bsp143I GATC 3 cut(s) 36, 253, 317
BspANI GGCC 3 cut(s) 49, 88, 339
BspDI ATCGAT 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 123, 223
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 36, 253, 317
BstC8I GCNNGC 2 cut(s) 108, 112
BstKTI GATC 3 cut(s) 39, 256, 320
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 3 cut(s) 36, 253, 317
BstSCI CCNGG 2 cut(s) 182, 339
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 3 cut(s) 49, 88, 339
BsuTUI ATCGAT 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 108, 112
Cfr13I GGNCC 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 69
CviAII CATG 1 cut(s) 79
DpnI GATC 3 cut(s) 38, 255, 319
DpnII GATC 3 cut(s) 36, 253, 317
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 2 cut(s) 43, 362
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 373
FatI CATG 1 cut(s) 78
FspBI CTAG 2 cut(s) 15, 203
HaeIII GGCC 3 cut(s) 49, 88, 339
HapII CCGG 2 cut(s) 184, 340
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 271
HpaII CCGG 2 cut(s) 184, 340
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 64, 348
Hpy188III TCNNGA 2 cut(s) 362, 364
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 329, 343, 347
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 3 cut(s) 36, 253, 317
LmnI GCTCC 2 cut(s) 121, 227
LpnPI CCDG 4 cut(s) 145, 152, 197, 353
MaeI CTAG 2 cut(s) 15, 203
MalI GATC 3 cut(s) 38, 255, 319
MboI GATC 3 cut(s) 36, 253, 317
MboII GAAGA 1 cut(s) 152
MfeI CAATTG 1 cut(s) 216
MluCI AATT 2 cut(s) 152, 216
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 310
MnlI CCTC 3 cut(s) 39, 247, 318
MroXI GAANNNNTTC 2 cut(s) 168, 357
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 2 cut(s) 184, 340
MspR9I CCNGG 2 cut(s) 184, 341
MunI CAATTG 1 cut(s) 216
NciI CCSGG 2 cut(s) 184, 341
NdeII GATC 3 cut(s) 36, 253, 317
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 2 cut(s) 123, 223
PaeR7I CTCGAG 2 cut(s) 43, 362
PdmI GAANNNNTTC 2 cut(s) 168, 357
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 123, 223
PspPI GGNCC 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 3 cut(s) 36, 253, 317
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 2 cut(s) 184, 341
SetI ASST 4 cut(s) 44, 171, 295, 358
Sfr274I CTCGAG 2 cut(s) 43, 362
SlaI CTCGAG 2 cut(s) 43, 362
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 43, 362
SmoI CTYRAG 2 cut(s) 43, 362
Sse9I AATT 2 cut(s) 152, 216
SspMI CTAG 2 cut(s) 15, 203
StyD4I CCNGG 2 cut(s) 182, 339
TaqI TCGA 3 cut(s) 44, 69, 363
TasI AATT 2 cut(s) 152, 216
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 67, 110, 145
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 152
XhoI CTCGAG 2 cut(s) 43, 362
XmnI GAANNNNTTC 2 cut(s) 168, 357
XspI CTAG 2 cut(s) 15, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.