Rorug04G0136200

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002623
Physical Location & Seq
Forward (+)
22101375 .. 22102214
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0136200.1

Sequence Viewer

Length: 297 bp
ATGGAGGAACAAATGAGTCTCTACAAAATAGGAAAATTCACAGAAGGGATTGTACACCTGGATAGAATTGCTCAATTGAAAGAGCCAGATGATCCAAAGAGCAAGGCTCATTATTTTGATGGGTTGTTAATGCTGGCAAGTGCTCTATCCAATGTGGGTCGCAAGGATGAAGCTTTAAAGCACCTGCGCTTGGCTGCTGCTTATAATCCTGCTTACAATGAATACGTGGAACAGTGTGAAAATGAGGACGATGGTTTAGTCAGTGATCTTGCCAGCAGTAGACGATCCGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

98

Amino Acids

11.1

Weight (kDa)

4.94

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 192
Acc36I ACCTGC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 280
AclWI GGATC 2 cut(s) 86, 279
AcsI RAATTY 1 cut(s) 35
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 79
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 86, 279
ApeKI GCWGC 2 cut(s) 194, 197
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 2 cut(s) 181, 184
BccI CCATC 2 cut(s) 113, 245
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 192
BisI GCNGC 2 cut(s) 195, 198
BlsI GCNGC 2 cut(s) 196, 199
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BsaAI YACGTR 1 cut(s) 226
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 181, 184
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 3 cut(s) 91, 265, 284
BspMI ACCTGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 86, 279
BsrGI TGTACA 1 cut(s) 52
BssMI GATC 3 cut(s) 91, 265, 284
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 135, 274
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 94, 268, 287
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 3 cut(s) 91, 265, 284
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 181, 184
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 239, 268
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 135, 274
CfoI GCGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 4 cut(s) 85, 107, 173, 194
CviKI_1 RGCY 4 cut(s) 85, 107, 173, 194
CviQI GTAC 1 cut(s) 53
DpnI GATC 3 cut(s) 93, 267, 286
DpnII GATC 3 cut(s) 91, 265, 284
DraI TTTAAA 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 57
FaiI YATR 1 cut(s) 204
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 195, 198
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 195, 198
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 195, 198
HhaI GCGC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 55, 281
Hpy188I TCNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 55, 281
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 225
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 91, 265, 284
LpnPI CCDG 7 cut(s) 44, 71, 99, 119, 197, 222, 286
Lsp1109I GCAGC 2 cut(s) 181, 184
MaeII ACGT 1 cut(s) 225
MalI GATC 3 cut(s) 93, 267, 286
MboI GATC 3 cut(s) 91, 265, 284
MfeI CAATTG 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 3 cut(s) 35, 66, 74
MlyI GAGTC 1 cut(s) 25
MnlI CCTC 1 cut(s) 238
MseI TTAA 2 cut(s) 128, 176
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 59
NdeII GATC 3 cut(s) 91, 265, 284
PaqCI CACCTGC 1 cut(s) 192
PkrI GCNGC 2 cut(s) 196, 199
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
Ppu21I YACGTR 1 cut(s) 226
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 128, 176
SatI GCNGC 2 cut(s) 195, 198
Sau3AI GATC 3 cut(s) 91, 265, 284
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 145
SetI ASST 4 cut(s) 60, 175, 186, 228
Sse9I AATT 3 cut(s) 35, 66, 74
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 228
TasI AATT 3 cut(s) 35, 66, 74
TatI WGTACW 1 cut(s) 52
Tru1I TTAA 2 cut(s) 128, 176
Tru9I TTAA 2 cut(s) 128, 176
TscAI CASTG 2 cut(s) 239, 268
TseI GCWGC 2 cut(s) 194, 197
TspDTI ATGAA 2 cut(s) 183, 234
TspRI CASTG 2 cut(s) 239, 268
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.