RLG00000008052

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002623
Physical Location & Seq
Reverse (-)
24975377 .. 24976274
898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008052

Sequence Viewer

Length: 405 bp
ATGGAGGGAAACTCTGGCGTATCAAATCGAAAAGAAGGCGGTGATGATCTCCTTGATATCACCCTCCGGCCACTGGGCCTTTCTGACATTGATGATTTCATGGTTTGGGCCACAGATGAGAAAGTGCCTCGTTTCTGCAGTTGGGAGCCATGTGCTAGAAGACAAGAAGCTCTAGAATTTATCAAGAATAAGATCATCCCACACCCCTGGTTCAGGGCAATTTGCTTAGATGGCAGACCAATTGGTGCCATTTCAGTGACCCCGTTCTCGGGTGATGATCGTTGTAGAGCTCAACTCAGATATGCTCTGGGATTCGCCTACTGGGGCAAAGGGATCACAACGAGGGCTGTGAAAATGTATGTTATGTTAGATGGTGTCACAAGTTCAAATTCTCGAACTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

135

Amino Acids

15.06

Weight (kDa)

7.65

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 20 - 119 2.4e-13 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 1 cut(s) 39
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 68
AcsI RAATTY 2 cut(s) 176, 388
AfiI CCNNNNNNNGG 4 cut(s) 73, 213, 268, 269
AgsI TTSAA 1 cut(s) 387
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 170, 290
AluI AGCT 2 cut(s) 170, 290
Alw21I GWGCWC 1 cut(s) 292
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 268
AoxI GGCC 3 cut(s) 68, 76, 108
ApoI RAATTY 2 cut(s) 176, 388
AspS9I GGNCC 2 cut(s) 76, 108
AsuHPI GGTGA 3 cut(s) 52, 53, 284
AvaI CYCGRG 1 cut(s) 268
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 2 cut(s) 224, 365
BciT130I CCWGG 1 cut(s) 208
BfaI CTAG 2 cut(s) 156, 173
BfmI CTRYAG 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 208
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 76, 108
BmiI GGNNCC 2 cut(s) 147, 247
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 2 cut(s) 83, 331
BmuI ACTGGG 2 cut(s) 83, 331
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 3 cut(s) 28, 279, 311
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 213, 268, 269
Bse1I ACTGG 2 cut(s) 78, 326
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 73, 213, 268, 269
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 2 cut(s) 78, 326
BshFI GGCC 3 cut(s) 70, 78, 110
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 268
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 4 cut(s) 73, 213, 268, 269
BsnI GGCC 3 cut(s) 70, 78, 110
BsoBI CYCGRG 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 4 cut(s) 46, 192, 277, 333
BspACI CCGC 1 cut(s) 39
BspANI GGCC 3 cut(s) 70, 78, 110
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 147, 247
BspMAI CTGCAG 1 cut(s) 140
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 245
BsrI ACTGG 2 cut(s) 78, 326
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 4 cut(s) 46, 192, 277, 333
Bst2UI CCWGG 1 cut(s) 208
BstDEI CTNAG 2 cut(s) 226, 296
BstENI CCTNNNNNAGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 195
BstKTI GATC 4 cut(s) 49, 195, 280, 336
BstMBI GATC 4 cut(s) 46, 192, 277, 333
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 136
BstV2I GAAGAC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 207
BsuRI GGCC 3 cut(s) 70, 78, 110
BtsCI GGATG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 71, 261
Cfr13I GGNCC 2 cut(s) 76, 108
CviAII CATG 2 cut(s) 100, 150
CviJI RGCY 7 cut(s) 70, 78, 110, 148, 170, 290, 347
CviKI_1 RGCY 7 cut(s) 70, 78, 110, 148, 170, 290, 347
DdeI CTNAG 2 cut(s) 226, 296
DpnI GATC 4 cut(s) 48, 194, 279, 335
DpnII GATC 4 cut(s) 46, 192, 277, 333
EaeI YGGCCR 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 292
FaeI CATG 2 cut(s) 103, 153
FaiI YATR 5 cut(s) 101, 151, 303, 360, 365
FatI CATG 2 cut(s) 99, 149
FokI GGATG 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 292
FspBI CTAG 2 cut(s) 156, 173
HaeIII GGCC 3 cut(s) 70, 78, 110
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 103, 153
HinfI GANTC 1 cut(s) 312
HpaII CCGG 1 cut(s) 67
HphI GGTGA 3 cut(s) 52, 53, 284
Hpy188I TCNGA 3 cut(s) 85, 299, 404
Hpy188III TCNNGA 3 cut(s) 173, 184, 393
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 226, 296
Hsp92II CATG 2 cut(s) 103, 153
Kzo9I GATC 4 cut(s) 46, 192, 277, 333
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 59, 80, 193, 199, 220, 293, 307
MaeI CTAG 2 cut(s) 156, 173
MaeIII GTNAC 2 cut(s) 256, 376
MalI GATC 4 cut(s) 48, 194, 279, 335
MboI GATC 4 cut(s) 46, 192, 277, 333
MboII GAAGA 1 cut(s) 171
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 4 cut(s) 176, 219, 240, 388
MnlI CCTC 3 cut(s) 74, 138, 336
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 4 cut(s) 46, 192, 277, 333
NlaIII CATG 2 cut(s) 103, 153
NlaIV GGNNCC 2 cut(s) 147, 247
NmuCI GTSAC 2 cut(s) 256, 376
PfeI GAWTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 147, 247
PspPI GGNCC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 292
Sau3AI GATC 4 cut(s) 46, 192, 277, 333
Sau96I GGNCC 2 cut(s) 76, 108
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 292
SetI ASST 2 cut(s) 172, 292
SfcI CTRYAG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 4 cut(s) 176, 219, 240, 388
SsiI CCGC 1 cut(s) 39
SspMI CTAG 2 cut(s) 156, 173
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 206
TaqI TCGA 2 cut(s) 28, 394
TasI AATT 4 cut(s) 176, 219, 240, 388
TfiI GAWTC 1 cut(s) 312
TscAI CASTG 2 cut(s) 78, 261
TseFI GTSAC 2 cut(s) 256, 376
Tsp45I GTSAC 2 cut(s) 256, 376
TspDTI ATGAA 1 cut(s) 88
TspRI CASTG 2 cut(s) 78, 261
XagI CCTNNNNNAGG 1 cut(s) 211
XapI RAATTY 2 cut(s) 176, 388
XbaI TCTAGA 1 cut(s) 172
XspI CTAG 2 cut(s) 156, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.