Rroxscaffold_5G00359480

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002623
Physical Location & Seq
Forward (+)
39647334 .. 39648857
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359480.1

Sequence Viewer

Length: 387 bp
ATGGCAAGGAACAGTCGAAACCATAAGATAGATAGTCATGGAGGGAAACTCGGCGTATCAAATCAAAAGGAAGGCGATGATAATCTCTTTGATATCTTCCTCGAGCCACCGGGTCTTTTTGACATTGATGATTTCATGGTTTGGGGCACGGATGAGAAAGTGCCTCGTTTCTATAGTTGGGAGCCTTGTGCTAGCGGACAAGAAGCTCTAGACTTTATCAAGAATAAGATCATCCCACACCCCCGGTTCGGGGCAATATGCTTAGATGGCAGACCAATTGGTGCCATTTCAATGACCCTATTCTCGGGTGATGATCGTTGTAGAGCTCAACTCGGATATGCTCGGGATTCGCCTATTGGGGCAAAGGGATCACAACGAGGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_3

Protein Analysis

128

Amino Acids

14.14

Weight (kDa)

5.87

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 376
AfiI CCNNNNNNNGG 4 cut(s) 248, 249, 250, 304
AgsI TTSAA 1 cut(s) 291
AluBI AGCT 2 cut(s) 206, 326
AluI AGCT 2 cut(s) 206, 326
Alw21I GWGCWC 1 cut(s) 328
AlwI GGATC 1 cut(s) 376
Ama87I CYCGRG 3 cut(s) 101, 304, 342
AsuC2I CCSGG 2 cut(s) 111, 244
AsuHPI GGTGA 1 cut(s) 320
AsuNHI GCTAGC 1 cut(s) 191
AvaI CYCGRG 3 cut(s) 101, 304, 342
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 328
BccI CCATC 1 cut(s) 260
BcnI CCSGG 2 cut(s) 111, 244
BfaI CTAG 2 cut(s) 192, 209
BfmI CTRYAG 1 cut(s) 172
Bme1390I CCNGG 2 cut(s) 111, 244
BmeT110I CYCGRG 3 cut(s) 101, 304, 342
BmiI GGNNCC 2 cut(s) 183, 283
BmrFI CCNGG 2 cut(s) 111, 244
BmtI GCTAGC 1 cut(s) 195
BplI GAGNNNNNCTC 4 cut(s) 33, 65, 315, 347
BpuMI CCSGG 2 cut(s) 111, 244
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 249, 250, 304
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 157, 231
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 248, 249, 250, 304
BseSI GKGCMC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 328
BsiHKCI CYCGRG 3 cut(s) 101, 304, 342
BsiSI CCGG 2 cut(s) 110, 244
BslI CCNNNNNNNGG 4 cut(s) 248, 249, 250, 304
BsoBI CYCGRG 3 cut(s) 101, 304, 342
Bsp1286I GDGCHC 2 cut(s) 149, 328
Bsp143I GATC 3 cut(s) 228, 313, 368
BspACI CCGC 1 cut(s) 195
BspLI GGNNCC 2 cut(s) 183, 283
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 228, 313, 368
Bst4CI ACNGT 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 157, 231
BstKTI GATC 3 cut(s) 231, 316, 371
BstMBI GATC 3 cut(s) 228, 313, 368
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 109, 242
BstSFI CTRYAG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 157, 231
Cac8I GCNNGC 1 cut(s) 193
CviAII CATG 2 cut(s) 38, 136
CviJI RGCY 4 cut(s) 106, 184, 206, 326
CviKI_1 RGCY 4 cut(s) 106, 184, 206, 326
DdeI CTNAG 1 cut(s) 262
DpnI GATC 3 cut(s) 230, 315, 370
DpnII GATC 3 cut(s) 228, 313, 368
Ecl136II GAGCTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 326
Eco88I CYCGRG 3 cut(s) 101, 304, 342
EcoICRI GAGCTC 1 cut(s) 326
EcoRV GATATC 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 328
FaeI CATG 2 cut(s) 41, 139
FaiI YATR 6 cut(s) 24, 39, 137, 174, 259, 339
FatI CATG 2 cut(s) 37, 135
FokI GGATG 2 cut(s) 164, 218
FriOI GRGCYC 1 cut(s) 328
FspBI CTAG 2 cut(s) 192, 209
HapII CCGG 2 cut(s) 110, 244
Hin1II CATG 2 cut(s) 41, 139
HinfI GANTC 1 cut(s) 347
HpaII CCGG 2 cut(s) 110, 244
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 335
Hpy188III TCNNGA 4 cut(s) 209, 220, 344, 384
HpyAV CCTTC 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 1 cut(s) 262
Hsp92II CATG 2 cut(s) 41, 139
Kzo9I GATC 3 cut(s) 228, 313, 368
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 2 cut(s) 123, 257
MaeI CTAG 2 cut(s) 192, 209
MalI GATC 3 cut(s) 230, 315, 370
MboI GATC 3 cut(s) 228, 313, 368
MboII GAAGA 1 cut(s) 88
MfeI CAATTG 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 149, 328
MluCI AATT 1 cut(s) 276
MnlI CCTC 4 cut(s) 35, 110, 174, 371
MslI CAYNNNNRTG 1 cut(s) 290
MspI CCGG 2 cut(s) 110, 244
MspR9I CCNGG 2 cut(s) 111, 244
MunI CAATTG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 267
NciI CCSGG 2 cut(s) 111, 244
NdeII GATC 3 cut(s) 228, 313, 368
NheI GCTAGC 1 cut(s) 191
NlaIII CATG 2 cut(s) 41, 139
NlaIV GGNNCC 2 cut(s) 183, 283
NmeAIII GCCGAG 1 cut(s) 30
PaeR7I CTCGAG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 183, 283
PspXI VCTCGAGB 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 290
SacI GAGCTC 1 cut(s) 328
Sau3AI GATC 3 cut(s) 228, 313, 368
ScrFI CCNGG 2 cut(s) 111, 244
SduI GDGCHC 2 cut(s) 149, 328
SetI ASST 2 cut(s) 208, 328
SfcI CTRYAG 1 cut(s) 172
Sfr274I CTCGAG 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 1 cut(s) 276
SsiI CCGC 1 cut(s) 195
SspMI CTAG 2 cut(s) 192, 209
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 2 cut(s) 109, 242
TaaI ACNGT 1 cut(s) 14
TaqI TCGA 2 cut(s) 16, 102
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 2 cut(s) 192, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.