FvH4_5g09180

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5300469 .. 5302548
2080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09180.t1

Sequence Viewer

Length: 1104 bp
ATGGCAGATAGTTCTCGCCAGTCTCTCATTCCGAGCTTCCTCTACTCTTCTTCTTCTTCCACTTCTTCAATTCTGTCGAAAAGATCGGTTGATTTGGATGCTGTGACACATAGAAGTGGTGCTACTCATGCATCGTCACCATTTATTTCGTCGTCGTCGAAGAGGGTGATGATTCAGTCACCCAAAGAGAAACTGGAGATGTACTCGCCGGCATATTATGCGGTGTGTACAGTCGGAGGGATGTTGGCCACCGGACCCACCCACACGGCTGTCACTCCTATTGATGTTCTCAAGTGTAACATGCAGATTGACCCGGCAAAGTACAAGACCATCAAATCTGGATTTGGAGTTCTGTTGAAGGAGCAAGGAATTAGAGGTTTCTACAAGGGTTGGGCGCCCACTTTGATTGGTTACAGTGCTCAGGGTGCCGGCAAGTATGGACTCTATGAGTATTTCAAGAAGTACTATGCAGACATTGCAGGGCCTGAGTTTGCAGCCAAGTACAAGACCTTGATCTATCTTGCAGGTTCTGCATCTGCTGAAGTGTTTGCTGATGTTGCCCTCTGTCCTATGGAAGCTGTCAAAGTTCGAGTCCAGACTCAGCCGGGGTTCGCCAGAGGTTTGTCAGATGGGCTGCCAAAGTTGATCAGATCGGACGGCGTTCGCGGGTTGTACAAAGGGATTGTTCCTCTTTGGGGACGCCAAATTCCTTATACAATGATGAAATTTGCGACTTTCGAGACATTTGTCGAGCTCTCTTACAAACATTTGATCCCAAAGCCAAAAGAGCAGTGCAGCATACCATTGCAGCTTGGGGTGAGCTTTGGCAGTGGATATGTGGCTGGTGTGTTCTGTGCTGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACCGTTAGTGATGCTGTGAAGAATCTAGGAGTATGGGGTCTTTTCACCCGGGGTCTCCCTCTTCGTATAGCCATGATCGGAACCCTTACAGGAAGCCAATGGGTCATCTATGATTCCTTCAAAGTTTTAATGGGCGTGCCAACAACCGGCGGCGCTGCTCCTTCCCCCACTGAGCTTGCAAGTGCTTGA

Protein Analysis

368

Amino Acids

39.38

Weight (kDa)

9.43

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 74 - 157 3.4e-20 Mitochondrial carrier protein
Mito_carr PF00153 169 - 255 6.8e-19 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 515
AccB1I GGYRCC 2 cut(s) 394, 425
AccII CGCG 1 cut(s) 666
AciI CCGC 3 cut(s) 221, 666, 1065
AclWI GGATC 1 cut(s) 766
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 2 cut(s) 705, 725
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 2 cut(s) 395, 700
AfaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
AfiI CCNNNNNNNGG 2 cut(s) 695, 1061
AgsI TTSAA 4 cut(s) 69, 358, 457, 1036
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 6 cut(s) 36, 578, 754, 811, 822, 1090
AluI AGCT 6 cut(s) 36, 578, 754, 811, 822, 1090
Alw21I GWGCWC 2 cut(s) 421, 756
Alw26I GTCTC 3 cut(s) 27, 734, 974
AlwI GGATC 1 cut(s) 766
AlwNI CAGNNNCTG 2 cut(s) 485, 530
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 2 cut(s) 246, 482
ApeKI GCWGC 5 cut(s) 494, 634, 795, 808, 1070
ApoI RAATTY 2 cut(s) 705, 725
ArsI GACNNNNNNTTYG 2 cut(s) 576, 608
AspLEI GCGC 2 cut(s) 397, 1070
AspS9I GGNCC 2 cut(s) 254, 482
AsuC2I CCSGG 4 cut(s) 314, 606, 964, 965
AsuHPI GGTGA 5 cut(s) 129, 171, 178, 829, 952
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 2 cut(s) 394, 425
BanII GRGCYC 1 cut(s) 756
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
Bbv12I GWGCWC 2 cut(s) 421, 756
BbvI GCAGC 5 cut(s) 506, 621, 807, 820, 1057
BccI CCATC 2 cut(s) 338, 623
BceAI ACGGC 2 cut(s) 282, 673
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 4 cut(s) 314, 606, 964, 965
BcoDI GTCTC 3 cut(s) 27, 734, 974
BfaI CTAG 1 cut(s) 941
BfoI RGCGCY 2 cut(s) 398, 1071
BfuAI ACCTGC 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 6 cut(s) 495, 635, 796, 809, 1066, 1071
BlsI GCNGC 6 cut(s) 496, 636, 797, 810, 1067, 1072
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 4 cut(s) 314, 606, 964, 965
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 2 cut(s) 254, 482
BmiI GGNNCC 4 cut(s) 256, 396, 427, 997
BmrFI CCNGG 4 cut(s) 314, 606, 964, 965
BmsI GCATC 4 cut(s) 88, 140, 542, 916
BoxI GACNNNNGTC 1 cut(s) 746
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 4 cut(s) 314, 606, 964, 965
BsaHI GRCGYC 2 cut(s) 395, 700
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 4 cut(s) 605, 906, 963, 964
BsaWI WCCGGW 1 cut(s) 251
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 1061
Bse118I RCCGGY 3 cut(s) 208, 428, 1061
Bse1I ACTGG 2 cut(s) 19, 198
Bse3DI GCAATG 2 cut(s) 474, 803
BseDI CCNNGG 4 cut(s) 605, 906, 963, 964
BseGI GGATG 2 cut(s) 103, 246
BseLI CCNNNNNNNGG 2 cut(s) 695, 1061
BseMI GCAATG 2 cut(s) 474, 803
BseMII CTCAG 4 cut(s) 434, 477, 614, 1077
BseNI ACTGG 2 cut(s) 19, 198
BseXI GCAGC 5 cut(s) 506, 621, 807, 820, 1057
BsgI GTGCAG 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 666
BshFI GGCC 2 cut(s) 248, 484
BshNI GGYRCC 2 cut(s) 394, 425
BsiHKAI GWGCWC 2 cut(s) 421, 756
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 7 cut(s) 209, 252, 314, 429, 605, 964, 1062
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 2 cut(s) 695, 1061
BsmAI GTCTC 3 cut(s) 27, 734, 974
BsmFI GGGAC 1 cut(s) 711
BsnI GGCC 2 cut(s) 248, 484
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 963
Bsp1286I GDGCHC 2 cut(s) 421, 756
Bsp1407I TGTACA 2 cut(s) 227, 672
Bsp143I GATC 6 cut(s) 83, 513, 645, 650, 771, 990
BspACI CCGC 3 cut(s) 221, 666, 1065
BspANI GGCC 2 cut(s) 248, 484
BspCNI CTCAG 4 cut(s) 433, 478, 613, 1078
BspFNI CGCG 1 cut(s) 666
BspLI GGNNCC 4 cut(s) 256, 396, 427, 997
BspMI ACCTGC 1 cut(s) 515
BspPI GGATC 1 cut(s) 766
BspT107I GGYRCC 2 cut(s) 394, 425
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 2 cut(s) 474, 803
BsrFI RCCGGY 3 cut(s) 208, 428, 1061
BsrGI TGTACA 2 cut(s) 227, 672
BsrI ACTGG 2 cut(s) 19, 198
BssAI RCCGGY 3 cut(s) 208, 428, 1061
BssECI CCNNGG 4 cut(s) 605, 906, 963, 964
BssMI GATC 6 cut(s) 83, 513, 645, 650, 771, 990
BssNI GRCGYC 2 cut(s) 395, 700
BssT1I CCWWGG 1 cut(s) 906
Bst4CI ACNGT 3 cut(s) 232, 416, 919
Bst6I CTCTTC 3 cut(s) 52, 155, 981
BstACI GRCGYC 2 cut(s) 395, 700
BstAPI GCANNNNNTGC 3 cut(s) 218, 476, 530
BstAUI TGTACA 2 cut(s) 227, 672
BstC8I GCNNGC 4 cut(s) 210, 430, 1052, 1092
BstDEI CTNAG 4 cut(s) 420, 486, 600, 1086
BstF5I GGATG 2 cut(s) 103, 246
BstFNI CGCG 1 cut(s) 666
BstH2I RGCGCY 2 cut(s) 398, 1071
BstHHI GCGC 2 cut(s) 397, 1070
BstKTI GATC 6 cut(s) 86, 516, 648, 653, 774, 993
BstMAI GTCTC 3 cut(s) 27, 734, 974
BstMBI GATC 6 cut(s) 83, 513, 645, 650, 771, 990
BstMWI GCNNNNNNNGC 8 cut(s) 128, 218, 425, 476, 530, 557, 787, 911
BstNSI RCATGY 1 cut(s) 304
BstPAI GACNNNNGTC 1 cut(s) 746
BstSCI CCNGG 4 cut(s) 312, 604, 962, 963
BstUI CGCG 1 cut(s) 666
BstV1I GCAGC 5 cut(s) 506, 621, 807, 820, 1057
BsuRI GGCC 2 cut(s) 248, 484
BtsCI GGATG 2 cut(s) 103, 246
BtsI GCAGTG 2 cut(s) 797, 835
BtsIMutI CAGTG 4 cut(s) 421, 797, 835, 1083
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 4 cut(s) 210, 430, 1052, 1092
CaiI CAGNNNCTG 2 cut(s) 485, 530
CfoI GCGC 2 cut(s) 397, 1070
Cfr10I RCCGGY 3 cut(s) 208, 428, 1061
Cfr13I GGNCC 2 cut(s) 254, 482
Cfr9I CCCGGG 1 cut(s) 963
CseI GACGC 1 cut(s) 708
Csp6I GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
CspCI CAANNNNNGTGG 3 cut(s) 388, 423, 1072
CviAII CATG 3 cut(s) 128, 301, 988
CviQI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
DdeI CTNAG 4 cut(s) 420, 486, 600, 1086
DinI GGCGCC 1 cut(s) 396
DpnI GATC 6 cut(s) 85, 515, 647, 652, 773, 992
DpnII GATC 6 cut(s) 83, 513, 645, 650, 771, 990
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 52, 155, 981
EarI CTCTTC 3 cut(s) 52, 155, 981
Ecl136II GAGCTC 1 cut(s) 754
Eco130I CCWWGG 1 cut(s) 906
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 754
EcoO109I RGGNCCY 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 906
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 756
EgeI GGCGCC 1 cut(s) 396
EheI GGCGCC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 906
FaeI CATG 3 cut(s) 131, 304, 991
FaqI GGGAC 1 cut(s) 711
FatI CATG 3 cut(s) 127, 300, 987
FauI CCCGC 1 cut(s) 659
FbaI TGATCA 1 cut(s) 645
Fnu4HI GCNGC 6 cut(s) 495, 635, 796, 809, 1066, 1071
FokI GGATG 2 cut(s) 110, 253
FriOI GRGCYC 1 cut(s) 756
Fsp4HI GCNGC 6 cut(s) 495, 635, 796, 809, 1066, 1071
FspBI CTAG 1 cut(s) 941
GlaI GCGC 2 cut(s) 396, 1069
GluI GCNGC 6 cut(s) 495, 635, 796, 809, 1066, 1071
GsuI CTGGAG 1 cut(s) 215
HaeII RGCGCY 2 cut(s) 398, 1071
HaeIII GGCC 2 cut(s) 248, 484
HapII CCGG 7 cut(s) 209, 252, 314, 429, 605, 964, 1062
HgaI GACGC 1 cut(s) 708
HhaI GCGC 2 cut(s) 397, 1070
Hin1I GRCGYC 2 cut(s) 395, 700
Hin1II CATG 3 cut(s) 131, 304, 991
Hin6I GCGC 2 cut(s) 395, 1068
HinP1I GCGC 2 cut(s) 395, 1068
HinfI GANTC 6 cut(s) 172, 441, 591, 598, 937, 1028
HpaII CCGG 7 cut(s) 209, 252, 314, 429, 605, 964, 1062
HphI GGTGA 5 cut(s) 129, 171, 178, 829, 952
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 6 cut(s) 33, 236, 628, 650, 655, 995
Hpy188III TCNNGA 4 cut(s) 339, 457, 595, 739
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 3 cut(s) 154, 157, 160
HpyAV CCTTC 3 cut(s) 352, 1042, 1086
HpyCH4III ACNGT 3 cut(s) 232, 416, 919
HpyF10VI GCNNNNNNNGC 8 cut(s) 128, 218, 425, 476, 530, 557, 787, 911
HpyF3I CTNAG 4 cut(s) 420, 486, 600, 1086
Hsp92I GRCGYC 2 cut(s) 395, 700
Hsp92II CATG 3 cut(s) 131, 304, 991
HspAI GCGC 2 cut(s) 395, 1068
KasI GGCGCC 1 cut(s) 394
KroI GCCGGC 2 cut(s) 208, 428
KroNI GCCGGC 2 cut(s) 210, 430
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 6 cut(s) 83, 513, 645, 650, 771, 990
LmnI GCTCC 2 cut(s) 361, 1078
Lsp1109I GCAGC 5 cut(s) 506, 621, 807, 820, 1057
LweI GCATC 4 cut(s) 88, 140, 542, 916
MaeI CTAG 1 cut(s) 941
MaeIII GTNAC 6 cut(s) 103, 135, 177, 271, 296, 410
MalI GATC 6 cut(s) 85, 515, 647, 652, 773, 992
MboI GATC 6 cut(s) 83, 513, 645, 650, 771, 990
MboII GAAGA 8 cut(s) 39, 42, 45, 48, 57, 172, 946, 968
MhlI GDGCHC 2 cut(s) 421, 756
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 4 cut(s) 69, 369, 705, 725
MluNI TGGCCA 1 cut(s) 248
Mly113I GGCGCC 1 cut(s) 395
MlyI GAGTC 3 cut(s) 435, 592, 600
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 9 cut(s) 50, 156, 230, 368, 572, 611, 699, 905, 984
Mox20I TGGCCA 1 cut(s) 248
Mph1103I ATGCAT 1 cut(s) 133
MroNI GCCGGC 2 cut(s) 208, 428
MscI TGGCCA 1 cut(s) 248
MseI TTAA 1 cut(s) 1043
MslI CAYNNNNRTG 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 248
MspI CCGG 7 cut(s) 209, 252, 314, 429, 605, 964, 1062
MspR9I CCNGG 4 cut(s) 314, 606, 964, 965
MvnI CGCG 1 cut(s) 666
MwoI GCNNNNNNNGC 8 cut(s) 128, 218, 425, 476, 530, 557, 787, 911
NaeI GCCGGC 2 cut(s) 210, 430
NarI GGCGCC 1 cut(s) 395
NciI CCSGG 4 cut(s) 314, 606, 964, 965
NdeII GATC 6 cut(s) 83, 513, 645, 650, 771, 990
NgoMIV GCCGGC 2 cut(s) 208, 428
NlaIII CATG 3 cut(s) 131, 304, 991
NlaIV GGNNCC 4 cut(s) 256, 396, 427, 997
NmuCI GTSAC 4 cut(s) 103, 135, 177, 271
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PdiI GCCGGC 2 cut(s) 210, 430
PfeI GAWTC 3 cut(s) 172, 937, 1028
PkrI GCNGC 6 cut(s) 496, 636, 797, 810, 1067, 1072
PleI GAGTC 3 cut(s) 435, 592, 599
PluTI GGCGCC 1 cut(s) 398
PpsI GAGTC 3 cut(s) 435, 592, 599
PshAI GACNNNNGTC 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 756
PspN4I GGNNCC 4 cut(s) 256, 396, 427, 997
PspPI GGNCC 2 cut(s) 254, 482
PstNI CAGNNNCTG 2 cut(s) 485, 530
RsaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
RsaNI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
RseI CAYNNNNRTG 1 cut(s) 114
SacI GAGCTC 1 cut(s) 756
SaqAI TTAA 1 cut(s) 1043
SatI GCNGC 6 cut(s) 495, 635, 796, 809, 1066, 1071
Sau3AI GATC 6 cut(s) 83, 513, 645, 650, 771, 990
Sau96I GGNCC 2 cut(s) 254, 482
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 3 cut(s) 435, 592, 600
ScrFI CCNGG 4 cut(s) 314, 606, 964, 965
SduI GDGCHC 2 cut(s) 421, 756
SfaNI GCATC 4 cut(s) 88, 140, 542, 916
SfoI GGCGCC 1 cut(s) 396
SinI GGWCC 1 cut(s) 254
SmaI CCCGGG 1 cut(s) 965
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 4 cut(s) 69, 369, 705, 725
SsiI CCGC 3 cut(s) 221, 666, 1065
SspDI GGCGCC 1 cut(s) 394
SspMI CTAG 1 cut(s) 941
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 4 cut(s) 312, 604, 962, 963
StyI CCWWGG 1 cut(s) 906
TaaI ACNGT 3 cut(s) 232, 416, 919
TaqI TCGA 5 cut(s) 77, 158, 589, 738, 750
TasI AATT 4 cut(s) 69, 369, 705, 725
TatI WGTACW 6 cut(s) 201, 227, 321, 462, 501, 672
TauI GCSGC 1 cut(s) 1068
TfiI GAWTC 3 cut(s) 172, 937, 1028
Tru1I TTAA 1 cut(s) 1043
Tru9I TTAA 1 cut(s) 1043
TscAI CASTG 4 cut(s) 421, 797, 835, 1090
TseFI GTSAC 4 cut(s) 103, 135, 177, 271
TseI GCWGC 5 cut(s) 494, 634, 795, 808, 1070
Tsp45I GTSAC 4 cut(s) 103, 135, 177, 271
TspDTI ATGAA 1 cut(s) 737
TspMI CCCGGG 1 cut(s) 963
TspRI CASTG 4 cut(s) 421, 797, 835, 1090
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 705, 725
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmaI CCCGGG 1 cut(s) 963
XspI CTAG 1 cut(s) 941
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.