Rroxscaffold_6G00412220

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
34854629 .. 34856992
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412220.1

Sequence Viewer

Length: 1041 bp
ATGTGCTCGAGGTCGTCGTCGTTGGTGAAGGAGATCAAGGCGTCGAGGTTTTCCCCGGGAGCTGGGGTACTTGAACGACACGTTGCTATCGGAGAGGGCGGAGAGCACGGCGACGAGGGCGGGGAATTTGATGGTGTGTTCAACGGTGAGGATCTTAGTCTTGCCGTCGGTGTAGAGATAAAAGTTTTGCAGGTTCAAGTCCACCAAATGAAGGAGGATACGATTTCGAAGCTGATGGAGAATCTTAAGCAAAATCAGTTTGATATGGAAAAGAGAATCAACGAGAAATGTGATCCTATTGACCCGGCAAAATACAAAAGCGTTATCTCTGGATTTGGAGTTATGTTCAGGGAGCAAGGAATTAGAGGTTTCTTTAGGGGTTGGGCGCCCACTTTGATTGGTTACAGTGCTCAGGGTGCCGGCAAGTACGGCCTCTACGAGTTCTTTAAGAAGTACTATACAGATATTGCAGGACCTGAGTATGCAGCCAAGTACAAAACCTTGATCTATCTCGCAGGTTCCGCATCTGCTGAAGTGTTTGCTGATGTTGCCCTCTGTCCTATGGAAGCTGTCAAAGTTCGAGTCCAGACTCAGCCGGGGTTCGCCAGAGGTTGTACAACGGGATTGTTCCTCTTTGGGGACGCCAAGATTCCTTATACAATGATGAAATTTTCATCTTTCGAGAAATTTGTCGCTCACTTACAAGCATGTGATCCAAGCCGATGTGCATCCAGCACAACCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGCTGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACTGTTAGTGATGCTGTGAAGAACCTAGGAGTGTGGGGTCTTTTCACCCGGGGTCTTCCTCTTCGTATAGTCATGATCGGAACCCTTACTGGAAGCCAATGGGGTATCTATGATGCCTGCAAAGTTTTCATGGGCGTACCAACTACTGGCGGCGCCGCTCCTGCTGCCACTGAGCTTGCCAATGCTTGA

Protein Analysis

346

Amino Acids

37.19

Weight (kDa)

7.52

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 104 - 155 3.7e-10 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 181, 506
AccB1I GGYRCC 3 cut(s) 385, 416, 1004
AccB7I CCANNNNNTGG 1 cut(s) 998
AccBSI CCGCTC 1 cut(s) 1010
AciI CCGC 5 cut(s) 99, 120, 522, 1002, 1008
AclWI GGATC 3 cut(s) 159, 287, 707
AcsI RAATTY 3 cut(s) 125, 668, 686
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 4 cut(s) 41, 386, 642, 1005
AfaI GTAC 6 cut(s) 69, 428, 455, 494, 616, 990
AfiI CCNNNNNNNGG 4 cut(s) 62, 211, 637, 998
AflII CTTAAG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 3 cut(s) 74, 142, 197
AluBI AGCT 6 cut(s) 62, 232, 569, 748, 759, 1027
AluI AGCT 6 cut(s) 62, 232, 569, 748, 759, 1027
Alw21I GWGCWC 3 cut(s) 8, 108, 412
AlwI GGATC 3 cut(s) 159, 287, 707
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 3 cut(s) 7, 55, 900
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 3 cut(s) 485, 745, 1016
ApoI RAATTY 3 cut(s) 125, 668, 686
ArsI GACNNNNNNTTYG 2 cut(s) 567, 599
AspA2I CCTAGG 1 cut(s) 877
AspLEI GCGC 2 cut(s) 388, 1007
AspS9I GGNCC 1 cut(s) 473
AsuC2I CCSGG 6 cut(s) 56, 57, 305, 597, 901, 902
AsuHPI GGTGA 3 cut(s) 37, 158, 889
AsuII TTCGAA 1 cut(s) 227
AvaI CYCGRG 3 cut(s) 7, 55, 900
AvaII GGWCC 1 cut(s) 473
AvrII CCTAGG 1 cut(s) 877
BanI GGYRCC 3 cut(s) 385, 416, 1004
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 3 cut(s) 8, 108, 412
BbvI GCAGC 3 cut(s) 497, 757, 1003
BccI CCATC 2 cut(s) 125, 229
BceAI ACGGC 3 cut(s) 124, 149, 445
BciVI GTATCC 1 cut(s) 211
BcnI CCSGG 6 cut(s) 56, 57, 305, 597, 901, 902
BfaI CTAG 1 cut(s) 878
BfoI RGCGCY 2 cut(s) 389, 1008
BfrI CTTAAG 1 cut(s) 245
BfuAI ACCTGC 2 cut(s) 181, 506
BfuI GTATCC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 848
BisI GCNGC 5 cut(s) 486, 746, 1003, 1008, 1017
BlnI CCTAGG 1 cut(s) 877
BlsI GCNGC 5 cut(s) 487, 747, 1004, 1009, 1018
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 6 cut(s) 56, 57, 305, 597, 901, 902
Bme18I GGWCC 1 cut(s) 473
BmeT110I CYCGRG 3 cut(s) 7, 55, 900
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 5 cut(s) 387, 418, 520, 934, 1006
BmrFI CCNGG 6 cut(s) 56, 57, 305, 597, 901, 902
BmsI GCATC 4 cut(s) 533, 737, 853, 955
BpiI GAAGAC 1 cut(s) 899
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 227
BpuMI CCSGG 6 cut(s) 56, 57, 305, 597, 901, 902
BsaBI GATNNNNATC 1 cut(s) 727
BsaHI GRCGYC 4 cut(s) 41, 386, 642, 1005
BsaJI CCNNGG 7 cut(s) 54, 55, 596, 843, 877, 900, 901
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 211, 637, 998
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 946, 1003
Bse8I GATNNNNATC 1 cut(s) 727
BseDI CCNNGG 7 cut(s) 54, 55, 596, 843, 877, 900, 901
BseGI GGATG 1 cut(s) 728
BseJI GATNNNNATC 1 cut(s) 727
BseLI CCNNNNNNNGG 4 cut(s) 62, 211, 637, 998
BseMII CTCAG 4 cut(s) 425, 468, 605, 1014
BseNI ACTGG 2 cut(s) 946, 1003
BseXI GCAGC 3 cut(s) 497, 757, 1003
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 3 cut(s) 385, 416, 1004
BsiHKAI GWGCWC 3 cut(s) 8, 108, 412
BsiHKCI CYCGRG 3 cut(s) 7, 55, 900
BsiSI CCGG 5 cut(s) 56, 305, 420, 596, 901
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 4 cut(s) 62, 211, 637, 998
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 1 cut(s) 432
BsoBI CYCGRG 3 cut(s) 7, 55, 900
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 3 cut(s) 8, 108, 412
Bsp1407I TGTACA 1 cut(s) 614
Bsp143I GATC 6 cut(s) 33, 151, 292, 504, 712, 927
BspACI CCGC 5 cut(s) 99, 120, 522, 1002, 1008
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 4 cut(s) 424, 469, 604, 1015
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 5 cut(s) 387, 418, 520, 934, 1006
BspMI ACCTGC 2 cut(s) 181, 506
BspPI GGATC 3 cut(s) 159, 287, 707
BspT104I TTCGAA 1 cut(s) 227
BspT107I GGYRCC 3 cut(s) 385, 416, 1004
BspTI CTTAAG 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 1010
BsrFI RCCGGY 1 cut(s) 419
BsrGI TGTACA 1 cut(s) 614
BsrI ACTGG 2 cut(s) 946, 1003
BssAI RCCGGY 1 cut(s) 419
BssECI CCNNGG 7 cut(s) 54, 55, 596, 843, 877, 900, 901
BssMI GATC 6 cut(s) 33, 151, 292, 504, 712, 927
BssNI GRCGYC 4 cut(s) 41, 386, 642, 1005
BssT1I CCWWGG 2 cut(s) 843, 877
Bst4CI ACNGT 3 cut(s) 146, 407, 856
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 4 cut(s) 41, 386, 642, 1005
BstAFI CTTAAG 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 614
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 421, 970, 1029
BstDEI CTNAG 5 cut(s) 155, 411, 477, 591, 1023
BstF5I GGATG 1 cut(s) 728
BstH2I RGCGCY 2 cut(s) 389, 1008
BstHHI GCGC 2 cut(s) 388, 1007
BstKTI GATC 6 cut(s) 36, 154, 295, 507, 715, 930
BstMBI GATC 6 cut(s) 33, 151, 292, 504, 712, 927
BstMWI GCNNNNNNNGC 8 cut(s) 117, 416, 429, 521, 548, 848, 1013, 1016
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 6 cut(s) 54, 55, 303, 595, 899, 900
BstV1I GCAGC 3 cut(s) 497, 757, 1003
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 1 cut(s) 728
BtsIMutI CAGTG 2 cut(s) 412, 1020
BveI ACCTGC 2 cut(s) 181, 506
Cac8I GCNNGC 3 cut(s) 421, 970, 1029
CaiI CAGNNNCTG 1 cut(s) 476
CciI TCATGA 1 cut(s) 924
CfoI GCGC 2 cut(s) 388, 1007
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 473
Cfr9I CCCGGG 2 cut(s) 55, 900
CseI GACGC 2 cut(s) 30, 650
Csp6I GTAC 6 cut(s) 68, 427, 454, 493, 615, 989
CspCI CAANNNNNGTGG 3 cut(s) 379, 414, 1009
CviAII CATG 3 cut(s) 708, 925, 982
CviQI GTAC 6 cut(s) 68, 427, 454, 493, 615, 989
DdeI CTNAG 5 cut(s) 155, 411, 477, 591, 1023
DinI GGCGCC 2 cut(s) 387, 1006
DpnI GATC 6 cut(s) 35, 153, 294, 506, 714, 929
DpnII GATC 6 cut(s) 33, 151, 292, 504, 712, 927
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
EciI GGCGGA 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 843, 877
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 552
Eco88I CYCGRG 3 cut(s) 7, 55, 900
EcoO109I RGGNCCY 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 843, 877
EgeI GGCGCC 2 cut(s) 387, 1006
EheI GGCGCC 2 cut(s) 387, 1006
ErhI CCWWGG 2 cut(s) 843, 877
FaeI CATG 3 cut(s) 711, 928, 985
FaqI GGGAC 1 cut(s) 653
FatI CATG 3 cut(s) 707, 924, 981
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 5 cut(s) 486, 746, 1003, 1008, 1017
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 5 cut(s) 486, 746, 1003, 1008, 1017
FspBI CTAG 1 cut(s) 878
GlaI GCGC 2 cut(s) 387, 1006
GluI GCNGC 5 cut(s) 486, 746, 1003, 1008, 1017
GsaI CCCAGC 1 cut(s) 66
HaeII RGCGCY 2 cut(s) 389, 1008
HaeIII GGCC 1 cut(s) 432
HapII CCGG 5 cut(s) 56, 305, 420, 596, 901
HgaI GACGC 2 cut(s) 30, 650
HhaI GCGC 2 cut(s) 388, 1007
Hin1I GRCGYC 4 cut(s) 41, 386, 642, 1005
Hin1II CATG 3 cut(s) 711, 928, 985
Hin6I GCGC 2 cut(s) 386, 1005
HinP1I GCGC 2 cut(s) 386, 1005
HinfI GANTC 5 cut(s) 241, 276, 582, 589, 649
HpaII CCGG 5 cut(s) 56, 305, 420, 596, 901
HphI GGTGA 3 cut(s) 37, 158, 889
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 92, 752, 932
Hpy188III TCNNGA 4 cut(s) 330, 586, 682, 925
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 5 cut(s) 19, 22, 46, 116, 170
HpyAV CCTTC 2 cut(s) 22, 205
HpyCH4III ACNGT 3 cut(s) 146, 407, 856
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 6 cut(s) 190, 470, 485, 728, 745, 972
HpyF10VI GCNNNNNNNGC 8 cut(s) 117, 416, 429, 521, 548, 848, 1013, 1016
HpyF3I CTNAG 5 cut(s) 155, 411, 477, 591, 1023
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 4 cut(s) 41, 386, 642, 1005
Hsp92II CATG 3 cut(s) 711, 928, 985
HspAI GCGC 2 cut(s) 386, 1005
KasI GGCGCC 2 cut(s) 385, 1004
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Kzo9I GATC 6 cut(s) 33, 151, 292, 504, 712, 927
LmnI GCTCC 3 cut(s) 59, 352, 1015
Lsp1109I GCAGC 3 cut(s) 497, 757, 1003
LweI GCATC 4 cut(s) 533, 737, 853, 955
MaeI CTAG 1 cut(s) 878
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 401
MalI GATC 6 cut(s) 35, 153, 294, 506, 714, 929
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 6 cut(s) 33, 151, 292, 504, 712, 927
MboII GAAGA 3 cut(s) 883, 899, 905
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 3 cut(s) 8, 108, 412
MluCI AATT 4 cut(s) 125, 360, 668, 686
Mly113I GGCGCC 2 cut(s) 386, 1005
MlyI GAGTC 2 cut(s) 583, 591
MroNI GCCGGC 1 cut(s) 419
MseI TTAA 2 cut(s) 246, 447
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 5 cut(s) 56, 305, 420, 596, 901
MspR9I CCNGG 6 cut(s) 56, 57, 305, 597, 901, 902
MwoI GCNNNNNNNGC 8 cut(s) 117, 416, 429, 521, 548, 848, 1013, 1016
NaeI GCCGGC 1 cut(s) 421
NarI GGCGCC 2 cut(s) 386, 1005
NciI CCSGG 6 cut(s) 56, 57, 305, 597, 901, 902
NdeII GATC 6 cut(s) 33, 151, 292, 504, 712, 927
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 3 cut(s) 711, 928, 985
NlaIV GGNNCC 5 cut(s) 387, 418, 520, 934, 1006
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 7
PagI TCATGA 1 cut(s) 924
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 435
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 241, 276, 649
PflMI CCANNNNNTGG 1 cut(s) 998
PkrI GCNGC 5 cut(s) 487, 747, 1004, 1009, 1018
PleI GAGTC 2 cut(s) 583, 590
PluTI GGCGCC 2 cut(s) 389, 1008
PpsI GAGTC 2 cut(s) 583, 590
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 5 cut(s) 387, 418, 520, 934, 1006
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
PspXI VCTCGAGB 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 6 cut(s) 69, 428, 455, 494, 616, 990
RsaNI GTAC 6 cut(s) 68, 427, 454, 493, 615, 989
SaqAI TTAA 2 cut(s) 246, 447
SatI GCNGC 5 cut(s) 486, 746, 1003, 1008, 1017
Sau3AI GATC 6 cut(s) 33, 151, 292, 504, 712, 927
Sau96I GGNCC 1 cut(s) 473
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 583, 591
ScrFI CCNGG 6 cut(s) 56, 57, 305, 597, 901, 902
SduI GDGCHC 3 cut(s) 8, 108, 412
SfaNI GCATC 4 cut(s) 533, 737, 853, 955
SfoI GGCGCC 2 cut(s) 387, 1006
Sfr274I CTCGAG 1 cut(s) 7
SfuI TTCGAA 1 cut(s) 227
SinI GGWCC 1 cut(s) 473
SlaI CTCGAG 1 cut(s) 7
SmaI CCCGGG 2 cut(s) 57, 902
SmlI CTYRAG 2 cut(s) 7, 245
SmoI CTYRAG 2 cut(s) 7, 245
Sse9I AATT 4 cut(s) 125, 360, 668, 686
SsiI CCGC 5 cut(s) 99, 120, 522, 1002, 1008
SspDI GGCGCC 2 cut(s) 385, 1004
SspMI CTAG 1 cut(s) 878
StyD4I CCNGG 6 cut(s) 54, 55, 303, 595, 899, 900
StyI CCWWGG 2 cut(s) 843, 877
TaaI ACNGT 3 cut(s) 146, 407, 856
TaiI ACGT 1 cut(s) 84
TaqI TCGA 5 cut(s) 8, 44, 227, 580, 681
TasI AATT 4 cut(s) 125, 360, 668, 686
TatI WGTACW 3 cut(s) 453, 492, 614
TauI GCSGC 2 cut(s) 1005, 1010
TfiI GAWTC 3 cut(s) 241, 276, 649
Tru1I TTAA 2 cut(s) 246, 447
Tru9I TTAA 2 cut(s) 246, 447
TscAI CASTG 2 cut(s) 412, 1027
TseI GCWGC 3 cut(s) 485, 745, 1016
TspDTI ATGAA 4 cut(s) 224, 663, 680, 970
TspMI CCCGGG 2 cut(s) 55, 900
TspRI CASTG 2 cut(s) 412, 1027
Van91I CCANNNNNTGG 1 cut(s) 998
Vha464I CTTAAG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 3 cut(s) 125, 668, 686
XceI RCATGY 1 cut(s) 711
XhoI CTCGAG 1 cut(s) 7
XmaI CCCGGG 2 cut(s) 55, 900
XmaJI CCTAGG 1 cut(s) 877
XspI CTAG 1 cut(s) 878
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.