Rh3DG203500

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003118
Physical Location & Seq
Forward (+)
18606471 .. 18626407
19937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG203500.1

Sequence Viewer

Length: 807 bp
ATGGAGAAAATTGCCTGGCTGATATTGGTGTTCTTGATTGGCAAATGTTACATCAACTCATCAGAGATAAAAGTTTTGCAGGTTCAAGTCCACCAAATGAAGGAGGATACGATTTCGAAGCTGATGGAGAATCTTAAGCAAAATCAGCTTGATATGGAAAAGAGAATCAACGAGAAATGTGATCCTGTCAAGTTGATCCGGAGTCAATTGGATGTAGCCACGGCGCTTAACGGAATCGCCAATGTGCTCAGGGTGCCGGCAAGTACGGCCTCTACGAGTTCTTTGCCGTTCGCCAGAGGTTTGTCAGATGGGCTACCAAAGTTTATCAAATCCGAAGGCGCTCTCGGGTTGTACAAAGGGGTTGTTCCTCTTTGGGGACGCCAAATTCCTTATACAATGATGAAATTTTCAACTTTCGAGAAATTTGTCGAGCTCACTTACAAGCATGTGATCCCAACACCGAAAGAGCAGTGCAGCACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGGCTGGTGGCCTGGTGTGTTCTGTCACTTCTGTGCTGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGAAACTGTTAGTGATGCATTGAAGAACCTAGGAGTGTGGGGTCTTTTCACCCGGGGTCTTCCTCTTCGTATACTCATGATCGGAACCCTTACTGGAAGCCAATGGGGTATCTATGATGCCTGCAAAGTTTTCATGGGCGTACCAACTACTGGCGGCGCCGCTCCTGCTGCCACTGAGCTTGCCAATGCTTGA

Protein Analysis

268

Amino Acids

29.27

Weight (kDa)

8.91

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 90 - 148 4.3e-09 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccB1I GGYRCC 2 cut(s) 253, 770
AccB7I CCANNNNNTGG 1 cut(s) 764
AccBSI CCGCTC 1 cut(s) 776
AccI GTMKAC 1 cut(s) 685
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 2 cut(s) 768, 774
AclWI GGATC 3 cut(s) 176, 190, 445
AcsI RAATTY 3 cut(s) 384, 404, 422
AcyI GRCGYC 2 cut(s) 379, 771
AfaI GTAC 3 cut(s) 265, 353, 756
AfiI CCNNNNNNNGG 3 cut(s) 100, 374, 764
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 86, 411, 637
AjnI CCWGG 2 cut(s) 14, 535
AleI CACNNNNGTG 1 cut(s) 555
AluBI AGCT 6 cut(s) 121, 148, 433, 490, 501, 793
AluI AGCT 6 cut(s) 121, 148, 433, 490, 501, 793
Alw21I GWGCWC 2 cut(s) 249, 435
AlwI GGATC 3 cut(s) 176, 190, 445
Ama87I CYCGRG 2 cut(s) 344, 666
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 2 cut(s) 267, 533
ApeKI GCWGC 3 cut(s) 474, 487, 782
ApoI RAATTY 3 cut(s) 384, 404, 422
AspA2I CCTAGG 1 cut(s) 643
AspLEI GCGC 3 cut(s) 226, 341, 773
AsuC2I CCSGG 2 cut(s) 667, 668
AsuHPI GGTGA 1 cut(s) 655
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 2 cut(s) 344, 666
AvrII CCTAGG 1 cut(s) 643
BanI GGYRCC 2 cut(s) 253, 770
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 2 cut(s) 249, 435
BbvI GCAGC 3 cut(s) 486, 499, 769
BccI CCATC 2 cut(s) 118, 302
BceAI ACGGC 3 cut(s) 237, 271, 282
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 2 cut(s) 16, 537
BciVI GTATCC 1 cut(s) 100
BcnI CCSGG 2 cut(s) 667, 668
BfaI CTAG 1 cut(s) 644
BfoI RGCGCY 3 cut(s) 227, 342, 774
BfrI CTTAAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 70
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 5 cut(s) 475, 488, 769, 774, 783
BlnI CCTAGG 1 cut(s) 643
BlsI GCNGC 5 cut(s) 476, 489, 770, 775, 784
Bme1390I CCNGG 4 cut(s) 16, 537, 667, 668
BmeT110I CYCGRG 2 cut(s) 344, 666
BmiI GGNNCC 3 cut(s) 255, 700, 772
BmrFI CCNGG 4 cut(s) 16, 537, 667, 668
BmsI GCATC 2 cut(s) 619, 721
BpiI GAAGAC 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 248
Bpu14I TTCGAA 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 667, 668
BsaHI GRCGYC 2 cut(s) 379, 771
BsaJI CCNNGG 5 cut(s) 219, 609, 643, 666, 667
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 374, 764
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 2 cut(s) 712, 769
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 2 cut(s) 16, 537
BseDI CCNNGG 5 cut(s) 219, 609, 643, 666, 667
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 100, 374, 764
BseMII CTCAG 2 cut(s) 262, 780
BseNI ACTGG 2 cut(s) 712, 769
BseXI GCAGC 3 cut(s) 486, 499, 769
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 2 cut(s) 269, 535
BshNI GGYRCC 2 cut(s) 253, 770
BsiHKAI GWGCWC 2 cut(s) 249, 435
BsiHKCI CYCGRG 2 cut(s) 344, 666
BsiSI CCGG 3 cut(s) 199, 257, 667
BslFI GGGAC 1 cut(s) 390
BslI CCNNNNNNNGG 3 cut(s) 100, 374, 764
BsmFI GGGAC 1 cut(s) 390
BsnI GGCC 2 cut(s) 269, 535
BsoBI CYCGRG 2 cut(s) 344, 666
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 249, 435
Bsp13I TCCGGA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 4 cut(s) 181, 195, 450, 693
BspACI CCGC 2 cut(s) 768, 774
BspANI GGCC 2 cut(s) 269, 535
BspCNI CTCAG 2 cut(s) 261, 781
BspEI TCCGGA 1 cut(s) 198
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 3 cut(s) 255, 700, 772
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 3 cut(s) 176, 190, 445
BspT104I TTCGAA 1 cut(s) 116
BspT107I GGYRCC 2 cut(s) 253, 770
BspTI CTTAAG 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 776
BsrFI RCCGGY 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 2 cut(s) 712, 769
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 5 cut(s) 219, 609, 643, 666, 667
BssMI GATC 4 cut(s) 181, 195, 450, 693
BssNAI GTATAC 1 cut(s) 686
BssNI GRCGYC 2 cut(s) 379, 771
BssT1I CCWWGG 2 cut(s) 609, 643
Bst1107I GTATAC 1 cut(s) 686
Bst2UI CCWGG 2 cut(s) 16, 537
Bst4CI ACNGT 1 cut(s) 622
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 2 cut(s) 379, 771
BstAFI CTTAAG 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 351
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 3 cut(s) 258, 736, 795
BstDEI CTNAG 2 cut(s) 248, 789
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 3 cut(s) 227, 342, 774
BstHHI GCGC 3 cut(s) 226, 341, 773
BstKTI GATC 4 cut(s) 184, 198, 453, 696
BstMBI GATC 4 cut(s) 181, 195, 450, 693
BstMWI GCNNNNNNNGC 5 cut(s) 145, 253, 266, 779, 782
BstNI CCWGG 2 cut(s) 16, 537
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 4 cut(s) 14, 535, 665, 666
BstV1I GCAGC 3 cut(s) 486, 499, 769
BstV2I GAAGAC 1 cut(s) 665
BstZ17I GTATAC 1 cut(s) 686
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 269, 535
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 2 cut(s) 476, 786
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 258, 736, 795
CciI TCATGA 1 cut(s) 690
CfoI GCGC 3 cut(s) 226, 341, 773
Cfr10I RCCGGY 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 666
CseI GACGC 1 cut(s) 387
Csp6I GTAC 3 cut(s) 264, 352, 755
CspCI CAANNNNNGTGG 1 cut(s) 775
CviAII CATG 3 cut(s) 446, 691, 748
CviQI GTAC 3 cut(s) 264, 352, 755
DdeI CTNAG 2 cut(s) 248, 789
DinI GGCGCC 1 cut(s) 772
DpnI GATC 4 cut(s) 183, 197, 452, 695
DpnII GATC 4 cut(s) 181, 195, 450, 693
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 1 cut(s) 433
Eco130I CCWWGG 2 cut(s) 609, 643
Eco24I GRGCYC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 433
Eco88I CYCGRG 2 cut(s) 344, 666
EcoICRI GAGCTC 1 cut(s) 433
EcoRII CCWGG 2 cut(s) 14, 535
EcoT14I CCWWGG 2 cut(s) 609, 643
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 435
EgeI GGCGCC 1 cut(s) 772
EheI GGCGCC 1 cut(s) 772
ErhI CCWWGG 2 cut(s) 609, 643
FaeI CATG 3 cut(s) 449, 694, 751
FaiI YATR 8 cut(s) 155, 393, 447, 516, 686, 692, 729, 749
FaqI GGGAC 1 cut(s) 390
FatI CATG 3 cut(s) 445, 690, 747
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 5 cut(s) 475, 488, 769, 774, 783
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 5 cut(s) 475, 488, 769, 774, 783
FspBI CTAG 1 cut(s) 644
GlaI GCGC 3 cut(s) 225, 340, 772
GluI GCNGC 5 cut(s) 475, 488, 769, 774, 783
HaeII RGCGCY 3 cut(s) 227, 342, 774
HaeIII GGCC 2 cut(s) 269, 535
HapII CCGG 3 cut(s) 199, 257, 667
HgaI GACGC 1 cut(s) 387
HhaI GCGC 3 cut(s) 226, 341, 773
Hin1I GRCGYC 2 cut(s) 379, 771
Hin1II CATG 3 cut(s) 449, 694, 751
Hin6I GCGC 3 cut(s) 224, 339, 771
HinP1I GCGC 3 cut(s) 224, 339, 771
HinfI GANTC 4 cut(s) 130, 165, 202, 234
HpaII CCGG 3 cut(s) 199, 257, 667
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 2 cut(s) 91, 686
Hpy188I TCNGA 5 cut(s) 64, 307, 334, 494, 698
Hpy188III TCNNGA 4 cut(s) 34, 199, 418, 691
Hpy8I GTNNAC 2 cut(s) 91, 686
HpyAV CCTTC 2 cut(s) 94, 329
HpyCH4III ACNGT 1 cut(s) 622
HpyCH4V TGCA 5 cut(s) 79, 474, 487, 632, 738
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 253, 266, 779, 782
HpyF3I CTNAG 2 cut(s) 248, 789
Hsp92I GRCGYC 2 cut(s) 379, 771
Hsp92II CATG 3 cut(s) 449, 694, 751
HspAI GCGC 3 cut(s) 224, 339, 771
KasI GGCGCC 1 cut(s) 770
Kpn2I TCCGGA 1 cut(s) 198
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 4 cut(s) 181, 195, 450, 693
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 3 cut(s) 486, 499, 769
LweI GCATC 2 cut(s) 619, 721
MaeI CTAG 1 cut(s) 644
MaeIII GTNAC 2 cut(s) 47, 548
MalI GATC 4 cut(s) 183, 197, 452, 695
MbiI CCGCTC 1 cut(s) 776
MboI GATC 4 cut(s) 181, 195, 450, 693
MboII GAAGA 3 cut(s) 649, 665, 671
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 2 cut(s) 249, 435
MluCI AATT 5 cut(s) 9, 206, 384, 404, 422
Mly113I GGCGCC 1 cut(s) 771
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 6 cut(s) 97, 280, 290, 378, 608, 687
Mph1103I ATGCAT 1 cut(s) 634
MroI TCCGGA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 256
MseI TTAA 2 cut(s) 135, 228
MslI CAYNNNNRTG 1 cut(s) 555
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 3 cut(s) 199, 257, 667
MspR9I CCNGG 4 cut(s) 16, 537, 667, 668
MunI CAATTG 1 cut(s) 206
MvaI CCWGG 2 cut(s) 16, 537
MwoI GCNNNNNNNGC 5 cut(s) 145, 253, 266, 779, 782
NaeI GCCGGC 1 cut(s) 258
NarI GGCGCC 1 cut(s) 771
NciI CCSGG 2 cut(s) 667, 668
NdeII GATC 4 cut(s) 181, 195, 450, 693
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 449, 694, 751
NlaIV GGNNCC 3 cut(s) 255, 700, 772
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 449
NspV TTCGAA 1 cut(s) 116
OliI CACNNNNGTG 1 cut(s) 555
PagI TCATGA 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PdiI GCCGGC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 130, 165, 234
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 5 cut(s) 476, 489, 770, 775, 784
PleI GAGTC 1 cut(s) 210
PluTI GGCGCC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 14, 535
PspGI CCWGG 2 cut(s) 14, 535
PspN4I GGNNCC 3 cut(s) 255, 700, 772
RsaI GTAC 3 cut(s) 265, 353, 756
RsaNI GTAC 3 cut(s) 264, 352, 755
RseI CAYNNNNRTG 1 cut(s) 555
SacI GAGCTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 135, 228
SatI GCNGC 5 cut(s) 475, 488, 769, 774, 783
Sau3AI GATC 4 cut(s) 181, 195, 450, 693
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 4 cut(s) 16, 537, 667, 668
SduI GDGCHC 2 cut(s) 249, 435
SetI ASST 9 cut(s) 84, 123, 150, 301, 435, 492, 503, 645, 795
SfaNI GCATC 2 cut(s) 619, 721
SfoI GGCGCC 1 cut(s) 772
SfuI TTCGAA 1 cut(s) 116
SmaI CCCGGG 1 cut(s) 668
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 5 cut(s) 9, 206, 384, 404, 422
SsiI CCGC 2 cut(s) 768, 774
SspDI GGCGCC 1 cut(s) 770
SspMI CTAG 1 cut(s) 644
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 4 cut(s) 14, 535, 665, 666
StyI CCWWGG 2 cut(s) 609, 643
TaaI ACNGT 1 cut(s) 622
TaqI TCGA 3 cut(s) 116, 417, 429
TasI AATT 5 cut(s) 9, 206, 384, 404, 422
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 771, 776
TfiI GAWTC 3 cut(s) 130, 165, 234
Tru1I TTAA 2 cut(s) 135, 228
Tru9I TTAA 2 cut(s) 135, 228
TscAI CASTG 2 cut(s) 476, 793
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 3 cut(s) 474, 487, 782
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 113, 416, 736
TspGWI ACGGA 1 cut(s) 246
TspMI CCCGGG 1 cut(s) 666
TspRI CASTG 2 cut(s) 476, 793
Van91I CCANNNNNTGG 1 cut(s) 764
Vha464I CTTAAG 1 cut(s) 134
XapI RAATTY 3 cut(s) 384, 404, 422
XceI RCATGY 1 cut(s) 449
XmaI CCCGGG 1 cut(s) 666
XmaJI CCTAGG 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 1 cut(s) 644
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.