Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000302.1

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

71084 .. 72216

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000302.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgttcagggagcaaggaattagaggtttctttaggggttgggcgcccactttgattggttacagtgcagatattgcaggacctgagtatgcagccaagttcaaaaccttgatccatctcgcaggttctgcatctgctgaagtgtttgctgatgttgccctctgtcctatggaagctgtcaaagttcgagtccagactcagccggggttcgccagaggtttgtcagatgggctaccaaagtttatcaaatccgaaggcgctctcgggttgtacaaagggactgttcctctttggggacgccaaattccttatacaatgatgaaattttcaactttcgagaaatttgtcgagctcacttacaagcatgtgatcccaacaccgaaagagcagtgcagcacccccttgcagctcggagtgagctttgcgtgtggatatgtggctggtgtgttctgtgctgttgtttcacaccctgctgataacttggtgtctttcctcaacaatgccaagggggcaactgttagtgatgtgactccagcagtgaagaacctaggagtgtggggtcttttcacccggggtcttcctcttcgtatagtcatgatcggaacccttactggaagccaatggggtaactatgatggctgcaaagttttcatgggcgtaccaactactggcagtgccgctcctgctgccactgagcttgccaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

236

Amino Acids

25.18

Weight (kDa)

9.1

Isoelectric Point (pI)

19.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccBSI	CCGCTC	1 cut(s)	680
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	2 cut(s)	106, 364
AcsI	RAATTY	3 cut(s)	303, 323, 341
AcuI	CTGAAG	1 cut(s)	159
AcyI	GRCGYC	2 cut(s)	44, 298
AfaI	GTAC	2 cut(s)	272, 660
AfiI	CCNNNNNNNGG	2 cut(s)	293, 668
AgsI	TTSAA	2 cut(s)	103, 330
AluBI	AGCT	5 cut(s)	176, 352, 409, 420, 697
AluI	AGCT	5 cut(s)	176, 352, 409, 420, 697
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	106, 364
AlwNI	CAGNNNCTG	2 cut(s)	83, 128
Ama87I	CYCGRG	2 cut(s)	263, 570
ApeKI	GCWGC	5 cut(s)	92, 393, 406, 639, 686
ApoI	RAATTY	3 cut(s)	303, 323, 341
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspA2I	CCTAGG	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	46, 260
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	3 cut(s)	204, 571, 572
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	2 cut(s)	263, 570
AvaII	GGWCC	1 cut(s)	80
AvrII	CCTAGG	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	104, 405, 418, 626, 673
BccI	CCATC	3 cut(s)	123, 221, 629
BcnI	CCSGG	3 cut(s)	204, 571, 572
BfaI	CTAG	1 cut(s)	548
BfoI	RGCGCY	2 cut(s)	47, 261
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	509
BisI	GCNGC	6 cut(s)	93, 394, 407, 640, 678, 687
BlnI	CCTAGG	1 cut(s)	547
BlsI	GCNGC	6 cut(s)	94, 395, 408, 641, 679, 688
Bme1390I	CCNGG	3 cut(s)	204, 571, 572
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	2 cut(s)	263, 570
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	45, 604
BmrFI	CCNGG	3 cut(s)	204, 571, 572
BmsI	GCATC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	516
BpuMI	CCSGG	3 cut(s)	204, 571, 572
BsaHI	GRCGYC	2 cut(s)	44, 298
BsaJI	CCNNGG	5 cut(s)	203, 504, 547, 570, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 668
Bse1I	ACTGG	2 cut(s)	616, 673
BseDI	CCNNGG	5 cut(s)	203, 504, 547, 570, 571
BseLI	CCNNNNNNNGG	2 cut(s)	293, 668
BseMII	CTCAG	3 cut(s)	75, 212, 684
BseNI	ACTGG	2 cut(s)	616, 673
BseXI	GCAGC	5 cut(s)	104, 405, 418, 626, 673
BsgI	GTGCAG	2 cut(s)	87, 412
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	2 cut(s)	263, 570
BsiSI	CCGG	2 cut(s)	203, 571
BslFI	GGGAC	2 cut(s)	292, 309
BslI	CCNNNNNNNGG	2 cut(s)	293, 668
BsmFI	GGGAC	2 cut(s)	292, 309
BsoBI	CYCGRG	2 cut(s)	263, 570
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	111, 369, 597
BspACI	CCGC	1 cut(s)	678
BspCNI	CTCAG	3 cut(s)	76, 211, 685
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	45, 604
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	2 cut(s)	106, 364
BspT107I	GGYRCC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	680
BsrGI	TGTACA	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	616, 673
BssECI	CCNNGG	5 cut(s)	203, 504, 547, 570, 571
BssMI	GATC	3 cut(s)	111, 369, 597
BssNI	GRCGYC	2 cut(s)	44, 298
BssT1I	CCWWGG	2 cut(s)	504, 547
Bst4CI	ACNGT	3 cut(s)	65, 283, 517
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	2 cut(s)	44, 298
BstAPI	GCANNNNNTGC	2 cut(s)	74, 128
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	3 cut(s)	84, 198, 693
BstH2I	RGCGCY	2 cut(s)	47, 261
BstHHI	GCGC	2 cut(s)	46, 260
BstKTI	GATC	3 cut(s)	114, 372, 600
BstMBI	GATC	3 cut(s)	111, 369, 597
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 128, 155, 509, 683, 686
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	202, 569, 570
BstV1I	GCAGC	5 cut(s)	104, 405, 418, 626, 673
BstV2I	GAAGAC	1 cut(s)	569
BtsI	GCAGTG	3 cut(s)	395, 543, 679
BtsIMutI	CAGTG	5 cut(s)	70, 395, 543, 679, 690
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	699
CaiI	CAGNNNCTG	2 cut(s)	83, 128
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	2 cut(s)	46, 260
Cfr13I	GGNCC	1 cut(s)	80
Cfr9I	CCCGGG	1 cut(s)	570
CseI	GACGC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	271, 659
CspCI	CAANNNNNGTGG	3 cut(s)	37, 72, 679
CviAII	CATG	3 cut(s)	365, 595, 652
CviQI	GTAC	2 cut(s)	271, 659
DdeI	CTNAG	3 cut(s)	84, 198, 693
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	3 cut(s)	113, 371, 599
DpnII	GATC	3 cut(s)	111, 369, 597
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	504, 547
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	2 cut(s)	263, 570
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	504, 547
EcoT38I	GRGCYC	1 cut(s)	354
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	504, 547
FaeI	CATG	3 cut(s)	368, 598, 655
FaiI	YATR	9 cut(s)	90, 170, 312, 366, 435, 590, 596, 633, 653
FaqI	GGGAC	2 cut(s)	292, 309
FatI	CATG	3 cut(s)	364, 594, 651
Fnu4HI	GCNGC	6 cut(s)	93, 394, 407, 640, 678, 687
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	6 cut(s)	93, 394, 407, 640, 678, 687
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	45, 259
GluI	GCNGC	6 cut(s)	93, 394, 407, 640, 678, 687
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	2 cut(s)	47, 261
HapII	CCGG	2 cut(s)	203, 571
HgaI	GACGC	1 cut(s)	306
HhaI	GCGC	2 cut(s)	46, 260
Hin1I	GRCGYC	2 cut(s)	44, 298
Hin1II	CATG	3 cut(s)	368, 598, 655
Hin6I	GCGC	2 cut(s)	44, 258
HinP1I	GCGC	2 cut(s)	44, 258
HinfI	GANTC	3 cut(s)	189, 196, 529
HpaII	CCGG	2 cut(s)	203, 571
HphI	GGTGA	1 cut(s)	559
Hpy188I	TCNGA	4 cut(s)	226, 253, 413, 602
Hpy188III	TCNNGA	3 cut(s)	193, 337, 595
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	3 cut(s)	65, 283, 517
HpyCH4V	TGCA	7 cut(s)	68, 77, 92, 131, 393, 406, 642
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 128, 155, 509, 683, 686
HpyF3I	CTNAG	3 cut(s)	84, 198, 693
Hsp92I	GRCGYC	2 cut(s)	44, 298
Hsp92II	CATG	3 cut(s)	368, 598, 655
HspAI	GCGC	2 cut(s)	44, 258
KasI	GGCGCC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	111, 369, 597
LmnI	GCTCC	2 cut(s)	10, 685
Lsp1109I	GCAGC	5 cut(s)	104, 405, 418, 626, 673
LweI	GCATC	1 cut(s)	140
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	3 cut(s)	59, 526, 626
MalI	GATC	3 cut(s)	113, 371, 599
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	3 cut(s)	111, 369, 597
MboII	GAAGA	3 cut(s)	553, 569, 575
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	18, 303, 323, 341
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	3 cut(s)	190, 198, 523
MnlI	CCTC	6 cut(s)	17, 170, 209, 297, 503, 591
MspI	CCGG	2 cut(s)	203, 571
MspR9I	CCNGG	3 cut(s)	204, 571, 572
MwoI	GCNNNNNNNGC	6 cut(s)	74, 128, 155, 509, 683, 686
NarI	GGCGCC	1 cut(s)	44
NciI	CCSGG	3 cut(s)	204, 571, 572
NdeII	GATC	3 cut(s)	111, 369, 597
NlaIII	CATG	3 cut(s)	368, 598, 655
NlaIV	GGNNCC	2 cut(s)	45, 604
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	368
PagI	TCATGA	1 cut(s)	594
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	6 cut(s)	94, 395, 408, 641, 679, 688
PleI	GAGTC	3 cut(s)	190, 197, 523
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	3 cut(s)	190, 197, 523
PpuMI	RGGWCCY	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	45, 604
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PstNI	CAGNNNCTG	2 cut(s)	83, 128
RsaI	GTAC	2 cut(s)	272, 660
RsaNI	GTAC	2 cut(s)	271, 659
SacI	GAGCTC	1 cut(s)	354
SatI	GCNGC	6 cut(s)	93, 394, 407, 640, 678, 687
Sau3AI	GATC	3 cut(s)	111, 369, 597
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	3 cut(s)	190, 198, 523
ScrFI	CCNGG	3 cut(s)	204, 571, 572
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	1 cut(s)	140
SfoI	GGCGCC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	80
SmaI	CCCGGG	1 cut(s)	572
Sse9I	AATT	4 cut(s)	18, 303, 323, 341
SsiI	CCGC	1 cut(s)	678
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	548
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	202, 569, 570
StyI	CCWWGG	2 cut(s)	504, 547
TaaI	ACNGT	3 cut(s)	65, 283, 517
TaqI	TCGA	3 cut(s)	187, 336, 348
TasI	AATT	4 cut(s)	18, 303, 323, 341
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	680
TscAI	CASTG	5 cut(s)	70, 395, 543, 679, 697
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	5 cut(s)	92, 393, 406, 639, 686
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	335, 640
TspMI	CCCGGG	1 cut(s)	570
TspRI	CASTG	5 cut(s)	70, 395, 543, 679, 697
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	3 cut(s)	303, 323, 341
XceI	RCATGY	1 cut(s)	368
XmaI	CCCGGG	1 cut(s)	570
XmaJI	CCTAGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.