Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000302.1

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

120701 .. 124097

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000302.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgccgctagcgagacttctccctcagcaccttggacgtaagaccatcaccgcttaccgcaacgccatttaccaggttgccgccaggcgagtcctcgcaacatggccggccattgatagtcagcggagggactcctgccaacgattattccccaggcaacgcctcactttcacaaccaccgcaacggggcgttgcagtcaaaacatgatcaccgagaacgcgtcgcctcgcaccgcgccaagacagcatcagaagctccagaagctggggactgaagcatatcagtcccacatcgaaaaaatgaagaagatcagctcattcctcacctataaaagccagaaattaatcaagaagttagctgaaattcagagcgatggagaaaattgcctggctgatattggtgttcttgattggcaaatgttacatcaactcatcagagataaaagttttgcaggttcaagtccaccaaacgaaggaggatacaatttcgacgctgatggagaatcgccattgattgacccggaaaaatacaaaagcgttatctctggatttggagttacgttcagggagcaaggaattagaggtttctttaggggttgggtgcccactttgattggttacagtgctcagggtgccggcaagtacggcctctacgagttctttgccgtttgccagaggttgtacaaaggggttgttcctctttgggaacgccaaattccttatgcaatgatgaaattttcaactttcgagaaatttgtcgagctcacttacaagcatgtgatcccaacaccgaaagagcagtgcagcacacccttgcagctcggagtgagctttgcgtgtggatatgtggctggtgtgttctgtgctgttgtttcacaccctgctgataacttggtgtctttcctcaacaatgccaaggggggaactgttagtgatgctgtgaagaatctaggagtgtggggtcttttcccccggggtcttcctcatcgtatagtcatgatcggaacccttactggaagccaatggggtatctatgatgcctgcaaagttttcatgggcgtaccaactactggcggcgctgctcctgctgccactgagcttgccaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

370

Amino Acids

40.98

Weight (kDa)

9.51

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	2 cut(s)	601, 632
AccB7I	CCANNNNNTGG	2 cut(s)	265, 1070
AccII	CGCG	2 cut(s)	221, 236
AciI	CCGC	8 cut(s)	5, 51, 58, 81, 124, 180, 234, 1074
AclWI	GGATC	1 cut(s)	775
AcoI	YGGCCR	2 cut(s)	104, 108
AcsI	RAATTY	4 cut(s)	363, 714, 734, 752
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	3 cut(s)	644, 683, 1062
AfiI	CCNNNNNNNGG	4 cut(s)	186, 265, 473, 1070
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	459, 741
AjnI	CCWGG	4 cut(s)	72, 83, 152, 387
AluBI	AGCT	8 cut(s)	256, 265, 315, 359, 763, 820, 831, 1099
AluI	AGCT	8 cut(s)	256, 265, 315, 359, 763, 820, 831, 1099
Alw21I	GWGCWC	2 cut(s)	628, 765
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	775
AlwNI	CAGNNNCTG	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	972
AoxI	GGCC	3 cut(s)	104, 108, 646
ApeKI	GCWGC	4 cut(s)	804, 817, 1079, 1088
ApoI	RAATTY	4 cut(s)	363, 714, 734, 752
AseI	ATTAAT	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	238, 1079
AsuC2I	CCSGG	3 cut(s)	521, 973, 974
AsuHPI	GGTGA	3 cut(s)	40, 202, 316
AsuNHI	GCTAGC	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	972
BaeGI	GKGCMC	1 cut(s)	606
BanI	GGYRCC	2 cut(s)	601, 632
BanII	GRGCYC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	971
Bbv12I	GWGCWC	2 cut(s)	628, 765
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	816, 829, 1066, 1075
BccI	CCATC	3 cut(s)	53, 368, 491
BceAI	ACGGC	2 cut(s)	650, 661
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	4 cut(s)	74, 85, 154, 389
BciVI	GTATCC	1 cut(s)	473
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	3 cut(s)	521, 973, 974
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	2 cut(s)	8, 950
BfoI	RGCGCY	1 cut(s)	1080
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	473
BisI	GCNGC	7 cut(s)	5, 81, 805, 818, 1075, 1080, 1089
BlsI	GCNGC	7 cut(s)	6, 82, 806, 819, 1076, 1081, 1090
Bme1390I	CCNGG	7 cut(s)	74, 85, 154, 389, 521, 973, 974
BmeT110I	CYCGRG	1 cut(s)	972
BmiI	GGNNCC	3 cut(s)	603, 634, 1006
BmrFI	CCNGG	7 cut(s)	74, 85, 154, 389, 521, 973, 974
BmsI	GCATC	3 cut(s)	256, 925, 1027
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	971
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	24, 627
BpuMI	CCSGG	3 cut(s)	521, 973, 974
BsaJI	CCNNGG	6 cut(s)	31, 152, 915, 971, 972, 973
Bsc4I	CCNNNNNNNGG	4 cut(s)	186, 265, 473, 1070
Bse118I	RCCGGY	2 cut(s)	106, 635
Bse1I	ACTGG	2 cut(s)	1018, 1075
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	4 cut(s)	74, 85, 154, 389
BseDI	CCNNGG	6 cut(s)	31, 152, 915, 971, 972, 973
BseLI	CCNNNNNNNGG	4 cut(s)	186, 265, 473, 1070
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	38, 641, 1086
BseNI	ACTGG	2 cut(s)	1018, 1075
BseSI	GKGCMC	1 cut(s)	606
BseXI	GCAGC	4 cut(s)	816, 829, 1066, 1075
BseYI	CCCAGC	1 cut(s)	265
BsgI	GTGCAG	1 cut(s)	823
Bsh1236I	CGCG	2 cut(s)	221, 236
BshFI	GGCC	3 cut(s)	106, 110, 648
BshNI	GGYRCC	2 cut(s)	601, 632
BsiHKAI	GWGCWC	2 cut(s)	628, 765
BsiHKCI	CYCGRG	1 cut(s)	972
BsiSI	CCGG	4 cut(s)	107, 521, 636, 973
BslFI	GGGAC	3 cut(s)	143, 271, 283
BslI	CCNNNNNNNGG	4 cut(s)	186, 265, 473, 1070
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	3 cut(s)	143, 271, 283
BsnI	GGCC	3 cut(s)	106, 110, 648
BsoBI	CYCGRG	1 cut(s)	972
Bsp1286I	GDGCHC	3 cut(s)	606, 628, 765
Bsp1407I	TGTACA	1 cut(s)	681
Bsp143I	GATC	4 cut(s)	207, 309, 780, 999
BspACI	CCGC	8 cut(s)	5, 51, 58, 81, 124, 180, 234, 1074
BspANI	GGCC	3 cut(s)	106, 110, 648
BspCNI	CTCAG	3 cut(s)	37, 640, 1087
BspFNI	CGCG	2 cut(s)	221, 236
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	3 cut(s)	603, 634, 1006
BspMI	ACCTGC	1 cut(s)	443
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	775
BspT107I	GGYRCC	2 cut(s)	601, 632
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	2 cut(s)	106, 635
BsrGI	TGTACA	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	1018, 1075
BssAI	RCCGGY	2 cut(s)	106, 635
BssECI	CCNNGG	6 cut(s)	31, 152, 915, 971, 972, 973
BssMI	GATC	4 cut(s)	207, 309, 780, 999
BssT1I	CCWWGG	2 cut(s)	31, 915
Bst2UI	CCWGG	4 cut(s)	74, 85, 154, 389
Bst4CI	ACNGT	2 cut(s)	623, 928
BstAUI	TGTACA	1 cut(s)	681
BstC8I	GCNNGC	5 cut(s)	9, 108, 637, 1042, 1101
BstDEI	CTNAG	3 cut(s)	24, 627, 1095
BstFNI	CGCG	2 cut(s)	221, 236
BstH2I	RGCGCY	1 cut(s)	1080
BstHHI	GCGC	2 cut(s)	238, 1079
BstKTI	GATC	4 cut(s)	210, 312, 783, 1002
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	4 cut(s)	207, 309, 780, 999
BstMWI	GCNNNNNNNGC	7 cut(s)	244, 253, 262, 632, 645, 1085, 1088
BstNI	CCWGG	4 cut(s)	74, 85, 154, 389
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	7 cut(s)	72, 83, 152, 387, 519, 971, 972
BstSLI	GKGCMC	1 cut(s)	606
BstUI	CGCG	2 cut(s)	221, 236
BstV1I	GCAGC	4 cut(s)	816, 829, 1066, 1075
BstV2I	GAAGAC	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	473
BsuRI	GGCC	3 cut(s)	106, 110, 648
BtgZI	GCGATG	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	806
BtsIMutI	CAGTG	3 cut(s)	628, 806, 1092
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	5 cut(s)	9, 108, 637, 1042, 1101
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	996
CfoI	GCGC	2 cut(s)	238, 1079
Cfr10I	RCCGGY	2 cut(s)	106, 635
Cfr9I	CCCGGG	1 cut(s)	972
CseI	GACGC	2 cut(s)	210, 500
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	643, 682, 1061
CspCI	CAANNNNNGTGG	3 cut(s)	595, 630, 1081
CviAII	CATG	5 cut(s)	102, 205, 776, 997, 1054
CviQI	GTAC	3 cut(s)	643, 682, 1061
DdeI	CTNAG	3 cut(s)	24, 627, 1095
DpnI	GATC	4 cut(s)	209, 311, 782, 1001
DpnII	GATC	4 cut(s)	207, 309, 780, 999
EaeI	YGGCCR	2 cut(s)	104, 108
Ecl136II	GAGCTC	1 cut(s)	763
Eco130I	CCWWGG	2 cut(s)	31, 915
Eco24I	GRGCYC	1 cut(s)	765
Eco53kI	GAGCTC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	972
EcoICRI	GAGCTC	1 cut(s)	763
EcoRII	CCWGG	4 cut(s)	72, 83, 152, 387
EcoT14I	CCWWGG	2 cut(s)	31, 915
EcoT38I	GRGCYC	1 cut(s)	765
ErhI	CCWWGG	2 cut(s)	31, 915
FaeI	CATG	5 cut(s)	105, 208, 779, 1000, 1057
FaqI	GGGAC	3 cut(s)	143, 271, 283
FatI	CATG	5 cut(s)	101, 204, 775, 996, 1053
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	7 cut(s)	5, 81, 805, 818, 1075, 1080, 1089
FriOI	GRGCYC	1 cut(s)	765
FseI	GGCCGGCC	1 cut(s)	110
Fsp4HI	GCNGC	7 cut(s)	5, 81, 805, 818, 1075, 1080, 1089
FspBI	CTAG	2 cut(s)	8, 950
GlaI	GCGC	2 cut(s)	237, 1078
GluI	GCNGC	7 cut(s)	5, 81, 805, 818, 1075, 1080, 1089
GsaI	CCCAGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	1080
HaeIII	GGCC	3 cut(s)	106, 110, 648
HapII	CCGG	4 cut(s)	107, 521, 636, 973
HgaI	GACGC	2 cut(s)	210, 500
HhaI	GCGC	2 cut(s)	238, 1079
Hin1II	CATG	5 cut(s)	105, 208, 779, 1000, 1057
Hin6I	GCGC	2 cut(s)	236, 1077
HinP1I	GCGC	2 cut(s)	236, 1077
HinfI	GANTC	4 cut(s)	90, 131, 503, 946
HpaII	CCGG	4 cut(s)	107, 521, 636, 973
HphI	GGTGA	3 cut(s)	40, 202, 316
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	5 cut(s)	252, 369, 437, 824, 1004
Hpy188III	TCNNGA	6 cut(s)	259, 349, 407, 546, 748, 997
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	2 cut(s)	226, 494
HpyAV	CCTTC	1 cut(s)	467
HpyCH4III	ACNGT	2 cut(s)	623, 928
HpyCH4IV	ACGT	2 cut(s)	37, 560
HpyCH4V	TGCA	6 cut(s)	195, 452, 725, 804, 817, 1044
HpyF10VI	GCNNNNNNNGC	7 cut(s)	244, 253, 262, 632, 645, 1085, 1088
HpyF3I	CTNAG	3 cut(s)	24, 627, 1095
HpySE526I	ACGT	2 cut(s)	37, 560
Hsp92II	CATG	5 cut(s)	105, 208, 779, 1000, 1057
HspAI	GCGC	2 cut(s)	236, 1077
KroI	GCCGGC	2 cut(s)	106, 635
KroNI	GCCGGC	2 cut(s)	108, 637
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	207, 309, 780, 999
LmnI	GCTCC	3 cut(s)	261, 568, 1087
Lsp1109I	GCAGC	4 cut(s)	816, 829, 1066, 1075
LweI	GCATC	3 cut(s)	256, 925, 1027
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	2 cut(s)	8, 950
MaeII	ACGT	2 cut(s)	37, 560
MaeIII	GTNAC	3 cut(s)	420, 556, 617
MalI	GATC	4 cut(s)	209, 311, 782, 1001
MboI	GATC	4 cut(s)	207, 309, 780, 999
MboII	GAAGA	4 cut(s)	316, 319, 955, 971
MhlI	GDGCHC	3 cut(s)	606, 628, 765
MluCI	AATT	8 cut(s)	341, 363, 382, 484, 576, 714, 734, 752
MluI	ACGCGT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	99, 125
MroNI	GCCGGC	2 cut(s)	106, 635
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	124
MspI	CCGG	4 cut(s)	107, 521, 636, 973
MspR9I	CCNGG	7 cut(s)	74, 85, 154, 389, 521, 973, 974
MvaI	CCWGG	4 cut(s)	74, 85, 154, 389
MvnI	CGCG	2 cut(s)	221, 236
MwoI	GCNNNNNNNGC	7 cut(s)	244, 253, 262, 632, 645, 1085, 1088
NaeI	GCCGGC	2 cut(s)	108, 637
NciI	CCSGG	3 cut(s)	521, 973, 974
NdeII	GATC	4 cut(s)	207, 309, 780, 999
NgoMIV	GCCGGC	2 cut(s)	106, 635
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	105, 208, 779, 1000, 1057
NlaIV	GGNNCC	3 cut(s)	603, 634, 1006
NspI	RCATGY	1 cut(s)	779
PagI	TCATGA	1 cut(s)	996
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PdiI	GCCGGC	2 cut(s)	108, 637
PfeI	GAWTC	2 cut(s)	503, 946
PflMI	CCANNNNNTGG	2 cut(s)	265, 1070
PkrI	GCNGC	7 cut(s)	6, 82, 806, 819, 1076, 1081, 1090
PleI	GAGTC	2 cut(s)	98, 125
PpsI	GAGTC	2 cut(s)	98, 125
PshBI	ATTAAT	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	765
Psp6I	CCWGG	4 cut(s)	72, 83, 152, 387
PspFI	CCCAGC	1 cut(s)	265
PspGI	CCWGG	4 cut(s)	72, 83, 152, 387
PspN4I	GGNNCC	3 cut(s)	603, 634, 1006
PstNI	CAGNNNCTG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	110
RsaI	GTAC	3 cut(s)	644, 683, 1062
RsaNI	GTAC	3 cut(s)	643, 682, 1061
SacI	GAGCTC	1 cut(s)	765
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	7 cut(s)	5, 81, 805, 818, 1075, 1080, 1089
Sau3AI	GATC	4 cut(s)	207, 309, 780, 999
SchI	GAGTC	2 cut(s)	99, 125
ScrFI	CCNGG	7 cut(s)	74, 85, 154, 389, 521, 973, 974
SduI	GDGCHC	3 cut(s)	606, 628, 765
SexAI	ACCWGGT	1 cut(s)	72
SfaNI	GCATC	3 cut(s)	256, 925, 1027
SmaI	CCCGGG	1 cut(s)	974
Sse9I	AATT	8 cut(s)	341, 363, 382, 484, 576, 714, 734, 752
SsiI	CCGC	8 cut(s)	5, 51, 58, 81, 124, 180, 234, 1074
SspMI	CTAG	2 cut(s)	8, 950
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	7 cut(s)	72, 83, 152, 387, 519, 971, 972
StyI	CCWWGG	2 cut(s)	31, 915
TaaI	ACNGT	2 cut(s)	623, 928
TaiI	ACGT	2 cut(s)	40, 563
TaqI	TCGA	4 cut(s)	294, 489, 747, 759
TasI	AATT	8 cut(s)	341, 363, 382, 484, 576, 714, 734, 752
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	3 cut(s)	7, 83, 1077
TfiI	GAWTC	2 cut(s)	503, 946
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	3 cut(s)	628, 806, 1099
TseI	GCWGC	4 cut(s)	804, 817, 1079, 1088
TspDTI	ATGAA	3 cut(s)	317, 746, 1042
TspMI	CCCGGG	1 cut(s)	972
TspRI	CASTG	3 cut(s)	628, 806, 1099
Van91I	CCANNNNNTGG	2 cut(s)	265, 1070
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	4 cut(s)	363, 714, 734, 752
XceI	RCATGY	1 cut(s)	779
XmaI	CCCGGG	1 cut(s)	972
XspI	CTAG	2 cut(s)	8, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.