Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007139.1

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

19588 .. 20644

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007139.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgttcagggagcaaggaataagaggtttctttaggggttgggcgcccactttgattggttacagtgctcagggtgccggcaagtacggcctctacgagttctttgccgttcgccagaggttgtacaaaggggttgttcctctttggggacgccaaattccttatacaatgatgaaatttacaactttcgagaaatctgtcgagctcacttacaagcatgtgatcccaacaccgaaagagcagtgcagcacaccctttcagctcggagtgagctttgcgtgtggatatgtggctggtgtgttctgtgctgttgtttcacaccctgctgataacttggtgtctttcctcaacaatgccaagggggaaactgttagtgatgcagtgaagaacctaggagtgtggggtcttttcacccggggtcttcctcttcgtatagtcatgatcggaacccttactggaagccaatggggtatctatgatgcctgcaaagttttcatgggcgtgccaactactggcggcgccgctcctgctgccactgagcttgccaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

184

Amino Acids

20.05

Weight (kDa)

9.36

Isoelectric Point (pI)

21.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	43, 74, 518
AccB7I	CCANNNNNTGG	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	524
AciI	CCGC	2 cut(s)	516, 522
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	156, 176
AcyI	GRCGYC	3 cut(s)	44, 151, 519
AfaI	GTAC	2 cut(s)	86, 125
AfiI	CCNNNNNNNGG	2 cut(s)	146, 512
AluBI	AGCT	4 cut(s)	205, 262, 273, 541
AluI	AGCT	4 cut(s)	205, 262, 273, 541
Alw21I	GWGCWC	2 cut(s)	70, 207
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	1 cut(s)	414
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	246, 530
ApoI	RAATTY	2 cut(s)	156, 176
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	46, 521
AsuC2I	CCSGG	2 cut(s)	415, 416
AsuHPI	GGTGA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	414
AvrII	CCTAGG	1 cut(s)	391
BanI	GGYRCC	3 cut(s)	43, 74, 518
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	2 cut(s)	70, 207
BbvI	GCAGC	2 cut(s)	258, 517
BceAI	ACGGC	2 cut(s)	92, 103
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcnI	CCSGG	2 cut(s)	415, 416
BfaI	CTAG	1 cut(s)	392
BfoI	RGCGCY	2 cut(s)	47, 522
BisI	GCNGC	4 cut(s)	247, 517, 522, 531
BlnI	CCTAGG	1 cut(s)	391
BlsI	GCNGC	4 cut(s)	248, 518, 523, 532
Bme1390I	CCNGG	2 cut(s)	415, 416
BmeT110I	CYCGRG	1 cut(s)	414
BmiI	GGNNCC	4 cut(s)	45, 76, 448, 520
BmrFI	CCNGG	2 cut(s)	415, 416
BmsI	GCATC	2 cut(s)	367, 469
BpiI	GAAGAC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	415, 416
BsaHI	GRCGYC	3 cut(s)	44, 151, 519
BsaJI	CCNNGG	4 cut(s)	357, 391, 414, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 512
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	2 cut(s)	460, 517
BseDI	CCNNGG	4 cut(s)	357, 391, 414, 415
BseLI	CCNNNNNNNGG	2 cut(s)	146, 512
BseMII	CTCAG	2 cut(s)	83, 528
BseNI	ACTGG	2 cut(s)	460, 517
BseXI	GCAGC	2 cut(s)	258, 517
BsgI	GTGCAG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	3 cut(s)	43, 74, 518
BsiHKAI	GWGCWC	2 cut(s)	70, 207
BsiHKCI	CYCGRG	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	78, 415
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	146, 512
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	70, 207
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	222, 441
BspACI	CCGC	2 cut(s)	516, 522
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	82, 529
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	45, 76, 448, 520
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	3 cut(s)	43, 74, 518
BsrBI	CCGCTC	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	460, 517
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	4 cut(s)	357, 391, 414, 415
BssMI	GATC	2 cut(s)	222, 441
BssNI	GRCGYC	3 cut(s)	44, 151, 519
BssT1I	CCWWGG	2 cut(s)	357, 391
Bst4CI	ACNGT	2 cut(s)	65, 370
Bst6I	CTCTTC	1 cut(s)	432
BstACI	GRCGYC	3 cut(s)	44, 151, 519
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	79, 484, 503, 543
BstDEI	CTNAG	2 cut(s)	69, 537
BstH2I	RGCGCY	2 cut(s)	47, 522
BstHHI	GCGC	2 cut(s)	46, 521
BstKTI	GATC	2 cut(s)	225, 444
BstMBI	GATC	2 cut(s)	222, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 87, 527, 530
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	413, 414
BstV1I	GCAGC	2 cut(s)	258, 517
BstV2I	GAAGAC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	248, 387
BtsIMutI	CAGTG	4 cut(s)	70, 248, 387, 534
Cac8I	GCNNGC	4 cut(s)	79, 484, 503, 543
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	2 cut(s)	46, 521
Cfr10I	RCCGGY	1 cut(s)	77
Cfr9I	CCCGGG	1 cut(s)	414
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	85, 124
CspCI	CAANNNNNGTGG	3 cut(s)	37, 72, 523
CviAII	CATG	3 cut(s)	218, 439, 496
CviJI	RGCY	7 cut(s)	90, 205, 262, 273, 293, 462, 541
CviKI_1	RGCY	7 cut(s)	90, 205, 262, 273, 293, 462, 541
CviQI	GTAC	2 cut(s)	85, 124
DdeI	CTNAG	2 cut(s)	69, 537
DinI	GGCGCC	2 cut(s)	45, 520
DpnI	GATC	2 cut(s)	224, 443
DpnII	GATC	2 cut(s)	222, 441
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	357, 391
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	357, 391
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	2 cut(s)	45, 520
EheI	GGCGCC	2 cut(s)	45, 520
ErhI	CCWWGG	2 cut(s)	357, 391
FaeI	CATG	3 cut(s)	221, 442, 499
FaiI	YATR	7 cut(s)	165, 219, 288, 434, 440, 477, 497
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	217, 438, 495
Fnu4HI	GCNGC	4 cut(s)	247, 517, 522, 531
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	247, 517, 522, 531
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	2 cut(s)	45, 520
GluI	GCNGC	4 cut(s)	247, 517, 522, 531
HaeII	RGCGCY	2 cut(s)	47, 522
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	78, 415
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	46, 521
Hin1I	GRCGYC	3 cut(s)	44, 151, 519
Hin1II	CATG	3 cut(s)	221, 442, 499
Hin6I	GCGC	2 cut(s)	44, 519
HinP1I	GCGC	2 cut(s)	44, 519
HpaII	CCGG	2 cut(s)	78, 415
HphI	GGTGA	1 cut(s)	403
Hpy188I	TCNGA	2 cut(s)	266, 446
Hpy188III	TCNNGA	2 cut(s)	190, 439
HpyCH4III	ACNGT	2 cut(s)	65, 370
HpyCH4V	TGCA	3 cut(s)	246, 380, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 87, 527, 530
HpyF3I	CTNAG	2 cut(s)	69, 537
Hsp92I	GRCGYC	3 cut(s)	44, 151, 519
Hsp92II	CATG	3 cut(s)	221, 442, 499
HspAI	GCGC	2 cut(s)	44, 519
KasI	GGCGCC	2 cut(s)	43, 518
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	222, 441
LmnI	GCTCC	2 cut(s)	10, 529
Lsp1109I	GCAGC	2 cut(s)	258, 517
LweI	GCATC	2 cut(s)	367, 469
MaeI	CTAG	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	224, 443
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	2 cut(s)	222, 441
MboII	GAAGA	3 cut(s)	397, 413, 419
MhlI	GDGCHC	2 cut(s)	70, 207
MluCI	AATT	2 cut(s)	156, 176
Mly113I	GGCGCC	2 cut(s)	44, 519
MnlI	CCTC	6 cut(s)	17, 101, 111, 150, 356, 435
MroNI	GCCGGC	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	500
MspI	CCGG	2 cut(s)	78, 415
MspR9I	CCNGG	2 cut(s)	415, 416
MwoI	GCNNNNNNNGC	4 cut(s)	74, 87, 527, 530
NaeI	GCCGGC	1 cut(s)	79
NarI	GGCGCC	2 cut(s)	44, 519
NciI	CCSGG	2 cut(s)	415, 416
NdeII	GATC	2 cut(s)	222, 441
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	3 cut(s)	221, 442, 499
NlaIV	GGNNCC	4 cut(s)	45, 76, 448, 520
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	248, 518, 523, 532
PluTI	GGCGCC	2 cut(s)	47, 522
Psp124BI	GAGCTC	1 cut(s)	207
PspN4I	GGNNCC	4 cut(s)	45, 76, 448, 520
RsaI	GTAC	2 cut(s)	86, 125
RsaNI	GTAC	2 cut(s)	85, 124
RseI	CAYNNNNRTG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	4 cut(s)	247, 517, 522, 531
Sau3AI	GATC	2 cut(s)	222, 441
ScrFI	CCNGG	2 cut(s)	415, 416
SduI	GDGCHC	2 cut(s)	70, 207
SetI	ASST	7 cut(s)	28, 122, 207, 264, 275, 393, 543
SfaNI	GCATC	2 cut(s)	367, 469
SfoI	GGCGCC	2 cut(s)	45, 520
SmaI	CCCGGG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	500
Sse9I	AATT	2 cut(s)	156, 176
SsiI	CCGC	2 cut(s)	516, 522
SspDI	GGCGCC	2 cut(s)	43, 518
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	413, 414
StyI	CCWWGG	2 cut(s)	357, 391
TaaI	ACNGT	2 cut(s)	65, 370
TaqI	TCGA	2 cut(s)	189, 201
TasI	AATT	2 cut(s)	156, 176
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	2 cut(s)	519, 524
TscAI	CASTG	4 cut(s)	70, 248, 387, 541
TseI	GCWGC	2 cut(s)	246, 530
TspDTI	ATGAA	2 cut(s)	188, 484
TspMI	CCCGGG	1 cut(s)	414
TspRI	CASTG	4 cut(s)	70, 248, 387, 541
Van91I	CCANNNNNTGG	1 cut(s)	512
XapI	RAATTY	2 cut(s)	156, 176
XceI	RCATGY	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	414
XmaJI	CCTAGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.