Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

35373008 .. 35375306

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAATTTGCAACCTTCGAGAAATTTTTCAAGCTCACTTACAAGCATGTGATCCCAACACCGAAAGAGCAGTGCAGCACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGCTCTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACTGTTAGTGATGCTGTGAAGAACCTAGGAGTGTGGGGTCTTTTCACCTGGGGTCTTCCTCTTCGTATAGTCATGATCGGAACTCTTACCGGAAGCCAAAGGGGTATCTATGATGCCTGCAAAGTTTTCATGGGCGTACCAACTACTGGCGGCGCCGCTCCTGCTGCCACTGAGCATGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

128

Amino Acids

13.46

Weight (kDa)

9.0

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	353
AciI	CCGC	2 cut(s)	345, 351
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	5, 23
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	34, 91, 102
AluI	AGCT	3 cut(s)	34, 91, 102
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	1 cut(s)	46
ApeKI	GCWGC	3 cut(s)	75, 88, 359
ApoI	RAATTY	2 cut(s)	5, 23
Asp700I	GAANNNNTTC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	232
AvrII	CCTAGG	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	87, 100, 346
BciT130I	CCWGG	1 cut(s)	244
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
BlnI	CCTAGG	1 cut(s)	220
BlsI	GCNGC	5 cut(s)	77, 90, 347, 352, 361
Bme1390I	CCNGG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	196, 298
BpiI	GAAGAC	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	3 cut(s)	186, 220, 243
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	3 cut(s)	186, 220, 243
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	87, 100, 346
BsgI	GTGCAG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	51, 270
BspACI	CCGC	2 cut(s)	345, 351
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	186, 220, 243
BssMI	GATC	2 cut(s)	51, 270
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	186, 220
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	313, 372
BstDEI	CTNAG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	54, 273
BstMBI	GATC	2 cut(s)	51, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
BstNI	CCWGG	1 cut(s)	244
BstNSI	RCATGY	2 cut(s)	50, 374
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	3 cut(s)	87, 100, 346
BstV2I	GAAGAC	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 363
Cac8I	GCNNGC	2 cut(s)	313, 372
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	4 cut(s)	47, 268, 325, 371
CviJI	RGCY	5 cut(s)	34, 91, 102, 122, 291
CviKI_1	RGCY	5 cut(s)	34, 91, 102, 122, 291
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	366
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	2 cut(s)	53, 272
DpnII	GATC	2 cut(s)	51, 270
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	186, 220
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	186, 220
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	186, 220
FaeI	CATG	4 cut(s)	50, 271, 328, 374
FaiI	YATR	7 cut(s)	48, 117, 263, 269, 306, 326, 372
FatI	CATG	4 cut(s)	46, 267, 324, 370
Fnu4HI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
Fsp4HI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
HaeII	RGCGCY	1 cut(s)	351
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	50, 271, 328, 374
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	95, 275
Hpy188III	TCNNGA	2 cut(s)	19, 268
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	11, 75, 88, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
HpyF3I	CTNAG	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	50, 271, 328, 374
HspAI	GCGC	1 cut(s)	348
KasI	GGCGCC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	51, 270
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	108, 165, 229, 256, 298, 325, 327, 369
Lsp1109I	GCAGC	3 cut(s)	87, 100, 346
LweI	GCATC	2 cut(s)	196, 298
MaeI	CTAG	1 cut(s)	221
MalI	GATC	2 cut(s)	53, 272
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	2 cut(s)	51, 270
MboII	GAAGA	3 cut(s)	226, 242, 248
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	2 cut(s)	5, 23
Mly113I	GGCGCC	1 cut(s)	348
MnlI	CCTC	2 cut(s)	185, 264
MroXI	GAANNNNTTC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
NarI	GGCGCC	1 cut(s)	348
NdeII	GATC	2 cut(s)	51, 270
NlaIII	CATG	4 cut(s)	50, 271, 328, 374
NlaIV	GGNNCC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	50, 374
PaeI	GCATGC	1 cut(s)	374
PagI	TCATGA	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	77, 90, 347, 352, 361
PluTI	GGCGCC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	349
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	375
SatI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
Sau3AI	GATC	2 cut(s)	51, 270
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	6 cut(s)	17, 36, 93, 104, 222, 245
SfaNI	GCATC	2 cut(s)	196, 298
SfoI	GGCGCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	375
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	5, 23
SsiI	CCGC	2 cut(s)	345, 351
SspDI	GGCGCC	1 cut(s)	347
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	186, 220
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	5, 23
TauI	GCSGC	2 cut(s)	348, 353
TscAI	CASTG	2 cut(s)	77, 370
TseI	GCWGC	3 cut(s)	75, 88, 359
TspDTI	ATGAA	2 cut(s)	17, 313
TspRI	CASTG	2 cut(s)	77, 370
Van91I	CCANNNNNTGG	1 cut(s)	341
XapI	RAATTY	2 cut(s)	5, 23
XceI	RCATGY	2 cut(s)	50, 374
XmaJI	CCTAGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.