Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Reverse (-)

13839218 .. 13840742

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGAGAAAATTGCCTGGCTGATATTGGTGTTCTTGATTGGGAAATGTTACATCAACTCATCAGAGGTAAAAGTTTTGCAGGTTCAAGTCCACCAAATGAAGGAGGATACGATTTCGAAGCTGATGGAGAATCTTAAGCAAAATCAGCTTGATATGGAAAAGAGAATCAACAAGAAATGTGATCCTGTCAAGTTGATCCGGAGTCAATTGGATGTAGCCAAGGCGCTTAACGGAATCGCCAATGTGCTCAGGGTGCCGGCAAGTACGGCCTCTACGAGTTCTTTGCCGTTCGCCAGAGGTTTGACAGATGGGCTACCAAAGTTTATCAAATCCGAAGGCGCTCTCGGGTTGTACAAAGGGATTATTCCTCTTTGGGGACGCCAAATTCCTTTTACAATGATGAAATTTTCAACTTTCGAGAAATTTGTCGAGCTCACTTACAAGCATGTGATCCCAACACCGAAAGAGCAGTGCAACACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGATGTTGTTTCACACCCTGCTGATAACTTGGCTGTGAAGAATCTAGGAGTGTGGGGTCTTTTCACCCGGGGTCTTCCTCTTCGTATAGTCATGATCGGAACCCTTACCGGAAGCCAATGGGGTATCTATGATGCCTGCAAAGTTTTCATGGGCGTACCAACTACTGGCAGCGCCGCTCCTGCTGCCACTGAGCTTGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

246

Amino Acids

26.95

Weight (kDa)

9.29

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	89 - 148	1.2e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	710
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	1 cut(s)	708
AclWI	GGATC	3 cut(s)	176, 190, 445
AcsI	RAATTY	3 cut(s)	384, 404, 422
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	3 cut(s)	265, 353, 690
AfiI	CCNNNNNNNGG	3 cut(s)	100, 374, 698
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	86, 411
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	6 cut(s)	121, 148, 433, 490, 501, 727
AluI	AGCT	6 cut(s)	121, 148, 433, 490, 501, 727
Alw21I	GWGCWC	2 cut(s)	249, 435
AlwI	GGATC	3 cut(s)	176, 190, 445
Ama87I	CYCGRG	2 cut(s)	344, 600
Aor13HI	TCCGGA	1 cut(s)	198
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	3 cut(s)	487, 702, 716
ApoI	RAATTY	3 cut(s)	384, 404, 422
AspLEI	GCGC	3 cut(s)	226, 341, 707
AsuC2I	CCSGG	2 cut(s)	601, 602
AsuHPI	GGTGA	1 cut(s)	589
AsuII	TTCGAA	1 cut(s)	116
AvaI	CYCGRG	2 cut(s)	344, 600
BanI	GGYRCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	249, 435
BbvI	GCAGC	3 cut(s)	499, 703, 714
BccI	CCATC	2 cut(s)	118, 302
BceAI	ACGGC	2 cut(s)	271, 282
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	16
BciVI	GTATCC	1 cut(s)	100
BcnI	CCSGG	2 cut(s)	601, 602
BfaI	CTAG	1 cut(s)	578
BfoI	RGCGCY	3 cut(s)	227, 342, 708
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	488, 703, 708, 717
BlsI	GCNGC	4 cut(s)	489, 704, 709, 718
Bme1390I	CCNGG	3 cut(s)	16, 601, 602
BmeT110I	CYCGRG	2 cut(s)	344, 600
BmiI	GGNNCC	2 cut(s)	255, 634
BmrFI	CCNGG	3 cut(s)	16, 601, 602
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	601, 602
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	219, 600, 601
BsaWI	WCCGGW	2 cut(s)	198, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 374, 698
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	1 cut(s)	703
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	219, 600, 601
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	100, 374, 698
BseMII	CTCAG	2 cut(s)	262, 714
BseNI	ACTGG	1 cut(s)	703
BseXI	GCAGC	3 cut(s)	499, 703, 714
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	253
BsiHKAI	GWGCWC	2 cut(s)	249, 435
BsiHKCI	CYCGRG	2 cut(s)	344, 600
BsiSI	CCGG	4 cut(s)	199, 257, 601, 642
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	3 cut(s)	100, 374, 698
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	269
BsoBI	CYCGRG	2 cut(s)	344, 600
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	249, 435
Bsp13I	TCCGGA	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	181, 195, 450, 627
BspACI	CCGC	1 cut(s)	708
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	2 cut(s)	261, 715
BspEI	TCCGGA	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	2 cut(s)	255, 634
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	3 cut(s)	176, 190, 445
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	710
BsrFI	RCCGGY	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	703
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	219, 600, 601
BssMI	GATC	4 cut(s)	181, 195, 450, 627
BssNI	GRCGYC	1 cut(s)	379
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	618
BstACI	GRCGYC	1 cut(s)	379
BstAFI	CTTAAG	1 cut(s)	134
BstAUI	TGTACA	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	3 cut(s)	258, 670, 729
BstDEI	CTNAG	2 cut(s)	248, 723
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	3 cut(s)	227, 342, 708
BstHHI	GCGC	3 cut(s)	226, 341, 707
BstKTI	GATC	4 cut(s)	184, 198, 453, 630
BstMBI	GATC	4 cut(s)	181, 195, 450, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 253, 266, 713, 716
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	14, 599, 600
BstV1I	GCAGC	3 cut(s)	499, 703, 714
BstV2I	GAAGAC	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	476, 720
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	3 cut(s)	258, 670, 729
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	3 cut(s)	226, 341, 707
Cfr10I	RCCGGY	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	600
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	264, 352, 689
CspCI	CAANNNNNGTGG	1 cut(s)	709
CviAII	CATG	3 cut(s)	446, 625, 682
CviQI	GTAC	3 cut(s)	264, 352, 689
DdeI	CTNAG	2 cut(s)	248, 723
DpnI	GATC	4 cut(s)	183, 197, 452, 629
DpnII	GATC	4 cut(s)	181, 195, 450, 627
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
Eco88I	CYCGRG	2 cut(s)	344, 600
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	449, 628, 685
FaiI	YATR	7 cut(s)	155, 447, 516, 620, 626, 663, 683
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	3 cut(s)	445, 624, 681
Fnu4HI	GCNGC	4 cut(s)	488, 703, 708, 717
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	4 cut(s)	488, 703, 708, 717
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	3 cut(s)	225, 340, 706
GluI	GCNGC	4 cut(s)	488, 703, 708, 717
HaeII	RGCGCY	3 cut(s)	227, 342, 708
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	4 cut(s)	199, 257, 601, 642
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	3 cut(s)	226, 341, 707
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	449, 628, 685
Hin6I	GCGC	3 cut(s)	224, 339, 705
HinP1I	GCGC	3 cut(s)	224, 339, 705
HinfI	GANTC	5 cut(s)	130, 165, 202, 234, 574
HpaII	CCGG	4 cut(s)	199, 257, 601, 642
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	64, 334, 494, 632
Hpy188III	TCNNGA	4 cut(s)	34, 199, 418, 625
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	94, 329
HpyCH4V	TGCA	4 cut(s)	79, 474, 487, 672
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 253, 266, 713, 716
HpyF3I	CTNAG	2 cut(s)	248, 723
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	449, 628, 685
HspAI	GCGC	3 cut(s)	224, 339, 705
Kpn2I	TCCGGA	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	181, 195, 450, 627
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	3 cut(s)	499, 703, 714
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	4 cut(s)	183, 197, 452, 629
MbiI	CCGCTC	1 cut(s)	710
MboI	GATC	4 cut(s)	181, 195, 450, 627
MboII	GAAGA	3 cut(s)	583, 599, 605
MfeI	CAATTG	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	249, 435
MluCI	AATT	5 cut(s)	9, 206, 384, 404, 422
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	6 cut(s)	58, 97, 280, 290, 378, 621
MroI	TCCGGA	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	256
MseI	TTAA	2 cut(s)	135, 228
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	4 cut(s)	199, 257, 601, 642
MspR9I	CCNGG	3 cut(s)	16, 601, 602
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	5 cut(s)	145, 253, 266, 713, 716
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	2 cut(s)	601, 602
NdeII	GATC	4 cut(s)	181, 195, 450, 627
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	449, 628, 685
NlaIV	GGNNCC	2 cut(s)	255, 634
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	116
PagI	TCATGA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	4 cut(s)	130, 165, 234, 574
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	4 cut(s)	489, 704, 709, 718
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	255, 634
RsaI	GTAC	3 cut(s)	265, 353, 690
RsaNI	GTAC	3 cut(s)	264, 352, 689
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	135, 228
SatI	GCNGC	4 cut(s)	488, 703, 708, 717
Sau3AI	GATC	4 cut(s)	181, 195, 450, 627
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	3 cut(s)	16, 601, 602
SduI	GDGCHC	2 cut(s)	249, 435
SetI	ASST	9 cut(s)	69, 84, 123, 150, 301, 435, 492, 503, 729
SfaNI	GCATC	1 cut(s)	655
SfuI	TTCGAA	1 cut(s)	116
SmaI	CCCGGG	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	9, 206, 384, 404, 422
SsiI	CCGC	1 cut(s)	708
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	3 cut(s)	14, 599, 600
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	3 cut(s)	116, 417, 429
TasI	AATT	5 cut(s)	9, 206, 384, 404, 422
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	4 cut(s)	130, 165, 234, 574
Tru1I	TTAA	2 cut(s)	135, 228
Tru9I	TTAA	2 cut(s)	135, 228
TscAI	CASTG	2 cut(s)	476, 727
TseI	GCWGC	3 cut(s)	487, 702, 716
TspDTI	ATGAA	3 cut(s)	113, 416, 670
TspGWI	ACGGA	1 cut(s)	246
TspMI	CCCGGG	1 cut(s)	600
TspRI	CASTG	2 cut(s)	476, 727
Van91I	CCANNNNNTGG	1 cut(s)	698
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	3 cut(s)	384, 404, 422
XceI	RCATGY	1 cut(s)	449
XmaI	CCCGGG	1 cut(s)	600
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.