Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Reverse (-)

7790077 .. 7791105

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0099500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTTGCTCTAGGGCTTTTATGCTACTCTGCATGGTGGTGGTGTCCATGGCGGCACTGTTGTTGGGCGGAGCCAAAGCAACCATAACCTGCAGTCAGGTGGTGAACAAGCTGACGCCGTGCATTTCCTACTTGGAAAAAGGTGGGACACCTGCCTCAGGTTGCTGCAGCGGGATCAAGACCCTCTACAGCACGGCACACACCACCGCTGACCTCCAGGGCGTTTGTAACTGTTTGAAAGAAAAAATCAGCAGTATTCACTACAGCAGCAGTAACGTCCGCTTTGCTGCTGGGCTTCCTGCCAAGTGCGGTATCAAAATTCCGTACAAGATCAGCCCCTCCACCAACTGCAAAAGCATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

121

Amino Acids

12.63

Weight (kDa)

9.28

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 109	2.3e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 117	7.9e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	2 cut(s)	98, 160
AciI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	4 cut(s)	165, 168, 267, 287
ApoI	RAATTY	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	157
BbvI	GCAGC	4 cut(s)	152, 180, 274, 279
BceAI	ACGGC	2 cut(s)	103, 210
BciT130I	CCWGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	4 cut(s)	91, 166, 187, 262
BfuAI	ACCTGC	2 cut(s)	98, 160
BisI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
BlsI	GCNGC	5 cut(s)	55, 167, 170, 269, 289
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	48, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse21I	CCTNAGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	48, 217
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	4 cut(s)	152, 180, 274, 279
BseYI	CCCAGC	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	174, 330
Bsp19I	CCATGG	1 cut(s)	48
BspACI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	73
BspMAI	CTGCAG	2 cut(s)	95, 170
BspMI	ACCTGC	2 cut(s)	98, 160
BspPI	GGATC	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	48, 217
BssMI	GATC	2 cut(s)	174, 330
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	60, 233
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	48
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	177, 333
BstMBI	GATC	2 cut(s)	174, 330
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	4 cut(s)	91, 166, 187, 262
BstV1I	GCAGC	4 cut(s)	152, 180, 274, 279
Bsu36I	CCTNAGG	1 cut(s)	157
BtgI	CCRYGG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	56
BveI	ACCTGC	2 cut(s)	98, 160
Cac8I	GCNNGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	34, 49
CviJI	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviKI_1	RGCY	6 cut(s)	5, 17, 74, 112, 295, 336
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	2 cut(s)	176, 332
DpnII	GATC	2 cut(s)	174, 330
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	48
Eco81I	CCTNAGG	1 cut(s)	157
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	37, 52
FaiI	YATR	4 cut(s)	23, 35, 50, 86
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	33, 48
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
Fsp4HI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	37, 52
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	60, 233
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	33, 93, 123, 168, 351
HpyF3I	CTNAG	1 cut(s)	157
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	37, 52
Kzo9I	GATC	2 cut(s)	174, 330
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	83, 103, 144, 165, 203, 230, 276, 312
Lsp1109I	GCAGC	4 cut(s)	152, 180, 274, 279
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	227, 272
MalI	GATC	2 cut(s)	176, 332
MboI	GATC	2 cut(s)	174, 330
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	4 cut(s)	166, 194, 224, 349
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	171, 209
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	48
NdeII	GATC	2 cut(s)	174, 330
NlaIII	CATG	2 cut(s)	37, 52
NlaIV	GGNNCC	1 cut(s)	73
PaqCI	CACCTGC	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	55, 167, 170, 269, 289
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	95, 170
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	5 cut(s)	54, 166, 169, 268, 288
Sau3AI	GATC	2 cut(s)	174, 330
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	8 cut(s)	92, 102, 114, 145, 154, 163, 216, 279
SfcI	CTRYAG	4 cut(s)	91, 166, 187, 262
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	6 cut(s)	53, 69, 171, 207, 280, 309
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	60, 233
TaiI	ACGT	1 cut(s)	279
TasI	AATT	1 cut(s)	318
TauI	GCSGC	1 cut(s)	56
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	4 cut(s)	165, 168, 267, 287
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	63
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	318
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.