Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

35284151 .. 35286374

Gene Structure 2224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAAAAGAGAATCAACATAAATATTGACCCGGCAAAATACAAAAGCGTTATCTCTGGATTTGGAGTTATGTTCAGGGAGCAAGGAATTAGAGGTTTCTTTAGGGGTGCCGGCAAGTATGGCCTCTACGAGTTCTTTAAGAAGTACTATGCAGATATTGAAGGACCTGAGTATGCAGCCAAGTACAAAACCTTGTTCTATCTCGCAGGTTCTGCATCTGCTGAAGTGTTTGCTGATACTCATCCGGGGTTCGCCATAGGTTTGTCAGATGGGCTACCAAAGTTTATCAAATCTGAAGGCGCTTTCGGGTTGTACAAAGGGATTGTTCCTCTTTGGGGACGCCAAATTCCTTATATAATGATGAAATTTGCAACCTTCGAGAAATTTTTCGAGCTCACTTACAAGCATGTGATCCCAATACCGAAAGAGCAGTGCAACACACCCTTGCAGCTCGGAGTGAGCTTTGTGTGTGGATATGTGGCTGGTGTGTTCTGTGCTGTTATTTCACACCCTGCTGATAAATTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACTGTTAGTGATGCTGTGGAGAACCTAGGAGTGTGGGGTCTTTTCACCCGGCGTCTTCCTCTTCGTATAGTCATGATCGGAACCCTTATCGGAAGCCAAAGGGGTATCTATGATGCCTGCCAAGTTTTCATGGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

232

Amino Acids

25.64

Weight (kDa)

9.24

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	88 - 134	9.9e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	345, 365, 383
AcuI	CTGAAG	2 cut(s)	243, 315
AcyI	GRCGYC	2 cut(s)	340, 607
AfaI	GTAC	3 cut(s)	146, 185, 314
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	161
AluBI	AGCT	3 cut(s)	394, 451, 462
AluI	AGCT	3 cut(s)	394, 451, 462
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	176, 448
ApoI	RAATTY	3 cut(s)	345, 365, 383
Asp700I	GAANNNNTTC	1 cut(s)	386
AspA2I	CCTAGG	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	32, 246, 604
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	164
AvrII	CCTAGG	1 cut(s)	580
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	188, 460
BccI	CCATC	1 cut(s)	263
BcnI	CCSGG	3 cut(s)	32, 246, 604
BfaI	CTAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	2 cut(s)	177, 449
BlnI	CCTAGG	1 cut(s)	580
BlsI	GCNGC	2 cut(s)	178, 450
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	3 cut(s)	32, 246, 604
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	109, 637
BmrFI	CCNGG	3 cut(s)	32, 246, 604
BmsI	GCATC	3 cut(s)	224, 556, 658
BpiI	GAAGAC	1 cut(s)	602
BpuMI	CCSGG	3 cut(s)	32, 246, 604
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	340, 607
BsaJI	CCNNGG	3 cut(s)	245, 546, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	110
Bse8I	GATNNNNATC	1 cut(s)	240
BseDI	CCNNGG	3 cut(s)	245, 546, 580
BseGI	GGATG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	188, 460
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	4 cut(s)	32, 111, 245, 604
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	411, 630
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	2 cut(s)	109, 637
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	107
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	245, 546, 580
BssMI	GATC	2 cut(s)	411, 630
BssNI	GRCGYC	2 cut(s)	340, 607
BssT1I	CCWWGG	2 cut(s)	546, 580
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	2 cut(s)	340, 607
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	112, 673
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	2 cut(s)	414, 633
BstMBI	GATC	2 cut(s)	411, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 212, 551
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	30, 244, 602
BstV1I	GCAGC	2 cut(s)	188, 460
BstV2I	GAAGAC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	1 cut(s)	437
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	2 cut(s)	112, 673
CaiI	CAGNNNCTG	1 cut(s)	212
CciI	TCATGA	1 cut(s)	627
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	2 cut(s)	348, 596
Csp6I	GTAC	3 cut(s)	145, 184, 313
CviAII	CATG	3 cut(s)	407, 628, 685
CviJI	RGCY	8 cut(s)	123, 179, 274, 394, 451, 462, 482, 651
CviKI_1	RGCY	8 cut(s)	123, 179, 274, 394, 451, 462, 482, 651
CviQI	GTAC	3 cut(s)	145, 184, 313
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	413, 632
DpnII	GATC	2 cut(s)	411, 630
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	546, 580
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	243, 315
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	164
EcoT14I	CCWWGG	2 cut(s)	546, 580
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	546, 580
FaeI	CATG	3 cut(s)	410, 631, 688
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	3 cut(s)	406, 627, 684
Fnu4HI	GCNGC	2 cut(s)	177, 449
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	2 cut(s)	177, 449
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	177, 449
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	4 cut(s)	32, 111, 245, 604
HgaI	GACGC	2 cut(s)	348, 596
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	2 cut(s)	340, 607
Hin1II	CATG	3 cut(s)	410, 631, 688
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	4 cut(s)	32, 111, 245, 604
HphI	GGTGA	1 cut(s)	592
Hpy188I	TCNGA	5 cut(s)	268, 295, 455, 635, 647
Hpy188III	TCNNGA	3 cut(s)	57, 379, 628
HpyAV	CCTTC	3 cut(s)	155, 290, 385
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4V	TGCA	6 cut(s)	152, 176, 215, 371, 435, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 212, 551
HpyF3I	CTNAG	1 cut(s)	168
Hsp92I	GRCGYC	2 cut(s)	340, 607
Hsp92II	CATG	3 cut(s)	410, 631, 688
HspAI	GCGC	1 cut(s)	300
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	411, 630
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	188, 460
LweI	GCATC	3 cut(s)	224, 556, 658
MaeI	CTAG	1 cut(s)	581
MalI	GATC	2 cut(s)	413, 632
MboI	GATC	2 cut(s)	411, 630
MboII	GAAGA	2 cut(s)	602, 608
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	5 cut(s)	87, 345, 365, 383, 521
MnlI	CCTC	5 cut(s)	86, 134, 339, 545, 624
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	689
MspI	CCGG	4 cut(s)	32, 111, 245, 604
MspR9I	CCNGG	3 cut(s)	32, 246, 604
MwoI	GCNNNNNNNGC	3 cut(s)	120, 212, 551
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	3 cut(s)	32, 246, 604
NdeII	GATC	2 cut(s)	411, 630
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	3 cut(s)	410, 631, 688
NlaIV	GGNNCC	2 cut(s)	109, 637
NspI	RCATGY	1 cut(s)	410
PagI	TCATGA	1 cut(s)	627
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	178, 450
PpuMI	RGGWCCY	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	109, 637
PspPI	GGNCC	1 cut(s)	164
PspPPI	RGGWCCY	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	146, 185, 314
RsaNI	GTAC	3 cut(s)	145, 184, 313
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	177, 449
Sau3AI	GATC	2 cut(s)	411, 630
Sau96I	GGNCC	1 cut(s)	164
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	32, 246, 604
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	224, 556, 658
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	689
Sse9I	AATT	5 cut(s)	87, 345, 365, 383, 521
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	30, 244, 602
StyI	CCWWGG	2 cut(s)	546, 580
TaaI	ACNGT	1 cut(s)	559
TaqI	TCGA	2 cut(s)	378, 390
TasI	AATT	5 cut(s)	87, 345, 365, 383, 521
TatI	WGTACW	3 cut(s)	144, 183, 312
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	437
TseI	GCWGC	2 cut(s)	176, 448
TspDTI	ATGAA	2 cut(s)	377, 673
TspRI	CASTG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	3 cut(s)	345, 365, 383
XceI	RCATGY	1 cut(s)	410
XmaJI	CCTAGG	1 cut(s)	580
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.