Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

35265325 .. 35265906

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024373

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAATTTGCAACCTTCCAGAAATTTGTCGAGCTCACTTACAAGCATGTGATCCCAACACTGAAAGAGCAGTGCAGCACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGCTGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCAAGGGGGCAACTGTTAGTGATGTGATGTGGGGTCTTTTCACCCGGTGTCTTCCTCTTCGTATAGTCATGATCGGAACCCTTACCGGAAGCCAATGGGGTTATCTATCATGCCTGCAAAGTTTTCATGGGCGTGTAAGCTTTCGATCCCTTCATTTTTTACCAACTACTGGCGGCGCCGCTCCTGCTGCCACTGAGCTTGCCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

132

Amino Acids

14.13

Weight (kDa)

8.95

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	2 cut(s)	357, 363
AclWI	GGATC	2 cut(s)	46, 324
AcsI	RAATTY	2 cut(s)	5, 23
AcyI	GRCGYC	1 cut(s)	360
AdeI	CACNNNGTG	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	353
AluBI	AGCT	5 cut(s)	34, 91, 102, 324, 382
AluI	AGCT	5 cut(s)	34, 91, 102, 324, 382
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	2 cut(s)	46, 324
ApeKI	GCWGC	3 cut(s)	75, 88, 371
ApoI	RAATTY	2 cut(s)	5, 23
AspLEI	GCGC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	87, 100, 358
BcnI	CCSGG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	76, 89, 358, 363, 372
BlsI	GCNGC	5 cut(s)	77, 90, 359, 364, 373
Bme1390I	CCNGG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	262, 361
BmrFI	CCNGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	87, 100, 358
BsgI	GTGCAG	1 cut(s)	94
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	229, 270
BslI	CCNNNNNNNGG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	3 cut(s)	51, 255, 329
BspACI	CCGC	2 cut(s)	357, 363
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	262, 361
BspPI	GGATC	2 cut(s)	46, 324
BspT107I	GGYRCC	1 cut(s)	359
BsrBI	CCGCTC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	51, 255, 329
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	2 cut(s)	299, 384
BstDEI	CTNAG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	54, 258, 332
BstMBI	GATC	3 cut(s)	51, 255, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 368, 371
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	87, 100, 358
BstV2I	GAAGAC	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	3 cut(s)	59, 77, 375
Cac8I	GCNNGC	2 cut(s)	299, 384
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	362
CspCI	CAANNNNNGTGG	1 cut(s)	364
CviAII	CATG	4 cut(s)	47, 253, 294, 311
CviJI	RGCY	7 cut(s)	34, 91, 102, 122, 276, 324, 382
CviKI_1	RGCY	7 cut(s)	34, 91, 102, 122, 276, 324, 382
DdeI	CTNAG	1 cut(s)	378
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	3 cut(s)	53, 257, 331
DpnII	GATC	3 cut(s)	51, 255, 329
DraIII	CACNNNGTG	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	50, 256, 297, 314
FaiI	YATR	6 cut(s)	48, 117, 248, 254, 295, 312
FatI	CATG	4 cut(s)	46, 252, 293, 310
Fnu4HI	GCNGC	5 cut(s)	76, 89, 358, 363, 372
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	76, 89, 358, 363, 372
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	5 cut(s)	76, 89, 358, 363, 372
HaeII	RGCGCY	1 cut(s)	363
HapII	CCGG	2 cut(s)	229, 270
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	50, 256, 297, 314
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	322
HpaII	CCGG	2 cut(s)	229, 270
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	95, 260
Hpy188III	TCNNGA	2 cut(s)	19, 253
HpyAV	CCTTC	2 cut(s)	25, 344
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	11, 75, 88, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 368, 371
HpyF3I	CTNAG	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	50, 256, 297, 314
HspAI	GCGC	1 cut(s)	360
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	3 cut(s)	51, 255, 329
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	32, 108, 165, 242, 283, 311, 339, 381
Lsp1109I	GCAGC	3 cut(s)	87, 100, 358
MalI	GATC	3 cut(s)	53, 257, 331
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	3 cut(s)	51, 255, 329
MboII	GAAGA	2 cut(s)	227, 233
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	5, 23
Mly113I	GGCGCC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	185, 249
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	2 cut(s)	229, 270
MspR9I	CCNGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	191, 368, 371
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	51, 255, 329
NlaIII	CATG	4 cut(s)	50, 256, 297, 314
NlaIV	GGNNCC	2 cut(s)	262, 361
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	252
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	77, 90, 359, 364, 373
PluTI	GGCGCC	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	262, 361
RseI	CAYNNNNRTG	1 cut(s)	315
SacI	GAGCTC	1 cut(s)	36
SatI	GCNGC	5 cut(s)	76, 89, 358, 363, 372
Sau3AI	GATC	3 cut(s)	51, 255, 329
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	17, 36, 93, 104, 326, 384
SfoI	GGCGCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	5, 23
SsiI	CCGC	2 cut(s)	357, 363
SspDI	GGCGCC	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	30, 328
TasI	AATT	2 cut(s)	5, 23
TauI	GCSGC	2 cut(s)	360, 365
TscAI	CASTG	3 cut(s)	66, 77, 382
TseI	GCWGC	3 cut(s)	75, 88, 371
TspDTI	ATGAA	3 cut(s)	17, 299, 326
TspRI	CASTG	3 cut(s)	66, 77, 382
Van91I	CCANNNNNTGG	1 cut(s)	353
XapI	RAATTY	2 cut(s)	5, 23
XceI	RCATGY	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.