Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007933.1

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

33913 .. 34503

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007933.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaaatttgcaactttcgagaaatttgtcgagctcacttacaagcatgtgatcccaacaccgaaagagcagtgcagcatacccttgcagctcggagtgagctttacgtgtggatatgtggctggtgtgttctgtgctgttgtttcacacccggctgataacttggtgtctttcctcaacaatgccaagggggcaactattagtgatgctgtcaagaatctaggagtgtggggtcttttcaccccgggtcttcctcttcgtatagtcatgatcggaacccttaccggaagccaatggggtatctatgatgcctgcaaagttttcatgggcgtaccaactactggcagcgccgctcctgctgccactgagcttgccaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

127

Amino Acids

13.4

Weight (kDa)

7.66

Isoelectric Point (pI)

22.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	353
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	2 cut(s)	5, 23
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	107
AluBI	AGCT	4 cut(s)	34, 91, 102, 370
AluI	AGCT	4 cut(s)	34, 91, 102, 370
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	75, 88, 345, 359
ApoI	RAATTY	2 cut(s)	5, 23
AspLEI	GCGC	1 cut(s)	350
AsuC2I	CCSGG	3 cut(s)	152, 245, 246
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	4 cut(s)	87, 100, 346, 357
BcnI	CCSGG	3 cut(s)	152, 245, 246
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
BlsI	GCNGC	5 cut(s)	77, 90, 347, 352, 361
Bme1390I	CCNGG	3 cut(s)	152, 245, 246
BmeT110I	CYCGRG	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	3 cut(s)	152, 245, 246
BmsI	GCATC	2 cut(s)	196, 298
BpiI	GAAGAC	1 cut(s)	242
BpuMI	CCSGG	3 cut(s)	152, 245, 246
BsaAI	YACGTR	1 cut(s)	108
BsaJI	CCNNGG	3 cut(s)	186, 243, 244
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	346
BseDI	CCNNGG	3 cut(s)	186, 243, 244
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	4 cut(s)	87, 100, 346, 357
BsgI	GTGCAG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	3 cut(s)	152, 245, 285
BslI	CCNNNNNNNGG	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	51, 270
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	186, 243, 244
BssMI	GATC	2 cut(s)	51, 270
BssT1I	CCWWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	313, 372
BstDEI	CTNAG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	54, 273
BstMBI	GATC	2 cut(s)	51, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
BstNSI	RCATGY	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	150, 243, 244
BstV1I	GCAGC	4 cut(s)	87, 100, 346, 357
BstV2I	GAAGAC	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 363
Cac8I	GCNNGC	2 cut(s)	313, 372
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	350
Cfr9I	CCCGGG	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	332
CspCI	CAANNNNNGTGG	1 cut(s)	352
CviAII	CATG	3 cut(s)	47, 268, 325
CviJI	RGCY	7 cut(s)	34, 91, 102, 122, 155, 291, 370
CviKI_1	RGCY	7 cut(s)	34, 91, 102, 122, 155, 291, 370
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	53, 272
DpnII	GATC	2 cut(s)	51, 270
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Ecl136II	GAGCTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	50, 271, 328
FaiI	YATR	7 cut(s)	48, 80, 117, 263, 269, 306, 326
FatI	CATG	3 cut(s)	46, 267, 324
Fnu4HI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
HaeII	RGCGCY	1 cut(s)	351
HapII	CCGG	3 cut(s)	152, 245, 285
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	3 cut(s)	50, 271, 328
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	152, 245, 285
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	95, 275
Hpy188III	TCNNGA	3 cut(s)	19, 214, 268
HpyCH4IV	ACGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	11, 75, 88, 315
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	50, 271, 328
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	51, 270
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	7 cut(s)	108, 165, 258, 298, 325, 327, 369
Lsp1109I	GCAGC	4 cut(s)	87, 100, 346, 357
LweI	GCATC	2 cut(s)	196, 298
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	107
MalI	GATC	2 cut(s)	53, 272
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	2 cut(s)	51, 270
MboII	GAAGA	2 cut(s)	242, 248
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	5, 23
MnlI	CCTC	2 cut(s)	185, 264
MspI	CCGG	3 cut(s)	152, 245, 285
MspR9I	CCNGG	3 cut(s)	152, 245, 246
MwoI	GCNNNNNNNGC	3 cut(s)	191, 356, 359
NciI	CCSGG	3 cut(s)	152, 245, 246
NdeII	GATC	2 cut(s)	51, 270
NlaIII	CATG	3 cut(s)	50, 271, 328
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	50
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	77, 90, 347, 352, 361
Ppu21I	YACGTR	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	36
SatI	GCNGC	5 cut(s)	76, 89, 346, 351, 360
Sau3AI	GATC	2 cut(s)	51, 270
ScrFI	CCNGG	3 cut(s)	152, 245, 246
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	5 cut(s)	36, 93, 104, 110, 372
SfaNI	GCATC	2 cut(s)	196, 298
SmaI	CCCGGG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	5, 23
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	36
StyD4I	CCNGG	3 cut(s)	150, 243, 244
StyI	CCWWGG	1 cut(s)	186
TaiI	ACGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	18, 30
TasI	AATT	2 cut(s)	5, 23
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	2 cut(s)	77, 370
TseI	GCWGC	4 cut(s)	75, 88, 345, 359
TspDTI	ATGAA	2 cut(s)	17, 313
TspMI	CCCGGG	1 cut(s)	244
TspRI	CASTG	2 cut(s)	77, 370
Van91I	CCANNNNNTGG	1 cut(s)	341
XapI	RAATTY	2 cut(s)	5, 23
XceI	RCATGY	1 cut(s)	50
XmaI	CCCGGG	1 cut(s)	244
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.