Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

7822159 .. 7825685

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0099600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTAGTTGCTGCAACTTCTGGAACTGGATTTGTTCTTGGAAGTGGCAATGCCGTCGATTTTGCTGGACTTTGTTGGATATGTGTTGGTACCATGATGTTTGCAGCATCTGCTAACTCTTTAAATCAGGTGTTCGAGAAGTATAATGATGCCAAACTGAAGAGAACGATGCAAAGACCCCTACCTTCAGGACGCATTACTAGGCCTCACGCAATTGCCTGGGCATTTACTGCTGGCTTAGCTGGCACTGCTTTGTTGGCAAGCAAGGCTAATATGCTGGCAGCTGGTCTTGATGCTTCCAATTTAATACTTTATGCATTTCTGTATACTCCATTAAAGCAAATTCACCCAGTAAATACATGGGTTGGCGCTGTTGTTGGTGCTATCCCACCACTTCTAGGGTACATTCTCGATTCTCAACAAATACTTTCCCCAGCTGGGACCTTATTAGCCACAATGGAGAAATCAATACCCTTAGAGGAAATGTTAACTGGCACACGACATACTTCTGTTATGACTCCTCCTCAGATTCTTTTGGATGCCTTAAGAAAGGCATTCTTGACCATAGAAGCAGTATGCTTGATGGTTATGGATGAGTGCCATCGGGCTACCGGAAGCCACCCTTATACAAAGATAATGAAGGTGTCTCATCCACAATGGACTGTGAAGATCAAATATCTGAACTTGAAAGCATTTGATTCCCAGTGGGCGGCAAAGAGTCGGAACTCATATACCCAAGAGCAACTTGATGAGGTGCGCATTGAAGCGGCTGACTACTTGCAGACGTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

264

Amino Acids

28.77

Weight (kDa)

8.84

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	6 - 151	3.4e-33	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	326
AciI	CCGC	2 cut(s)	710, 767
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	2 cut(s)	171, 179
AfaI	GTAC	2 cut(s)	91, 404
AfiI	CCNNNNNNNGG	3 cut(s)	398, 438, 709
AflII	CTTAAG	1 cut(s)	544
AgsI	TTSAA	2 cut(s)	688, 764
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	242, 284, 437
AluI	AGCT	3 cut(s)	242, 284, 437
Alw26I	GTCTC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	11, 104, 281
ApoI	RAATTY	1 cut(s)	342
Asp718I	GGTACC	1 cut(s)	89
AspLEI	GCGC	2 cut(s)	371, 759
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	116, 293
BccI	CCATC	2 cut(s)	577, 609
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	3 cut(s)	5, 201, 398
BfmI	CTRYAG	1 cut(s)	791
BfoI	RGCGCY	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	544
BisI	GCNGC	5 cut(s)	12, 105, 282, 711, 768
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	5 cut(s)	13, 106, 283, 712, 769
Bme1390I	CCNGG	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	91, 442
BmrFI	CCNGG	1 cut(s)	220
BmrI	ACTGGG	2 cut(s)	344, 697
BmsI	GCATC	5 cut(s)	116, 139, 159, 283, 529
BmuI	ACTGGG	2 cut(s)	344, 697
Bpu1102I	GCTNAGC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	611
Bsc4I	CCNNNNNNNGG	3 cut(s)	398, 438, 709
Bse1I	ACTGG	4 cut(s)	31, 350, 496, 703
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	3 cut(s)	544, 598, 649
BseLI	CCNNNNNNNGG	3 cut(s)	398, 438, 709
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	4 cut(s)	31, 350, 496, 703
BseRI	GAGGAG	2 cut(s)	510, 513
BseXI	GCAGC	2 cut(s)	116, 293
BseYI	CCCAGC	2 cut(s)	433, 437
BshFI	GGCC	1 cut(s)	205
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	612
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	3 cut(s)	398, 438, 709
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	669
Bsp1720I	GCTNAGC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	710, 767
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	91, 442
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	4 cut(s)	31, 350, 496, 703
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	669
BssNAI	GTATAC	1 cut(s)	327
Bst1107I	GTATAC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	544
BstAPI	GCANNNNNTGC	3 cut(s)	110, 230, 787
BstC8I	GCNNGC	4 cut(s)	235, 244, 262, 279
BstDEI	CTNAG	3 cut(s)	238, 475, 525
BstF5I	GGATG	3 cut(s)	544, 598, 649
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	371, 759
BstKTI	GATC	1 cut(s)	672
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	1 cut(s)	669
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 230, 239, 243, 248, 257, 266, 787
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	791
BstV1I	GCAGC	2 cut(s)	116, 293
BstZ17I	GTATAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	544, 598, 649
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	246, 710
Cac8I	GCNNGC	4 cut(s)	235, 244, 262, 279
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	2 cut(s)	371, 759
Cfr13I	GGNCC	1 cut(s)	441
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	90, 403
CviAII	CATG	2 cut(s)	94, 360
CviQI	GTAC	2 cut(s)	90, 403
DdeI	CTNAG	3 cut(s)	238, 475, 525
DpnI	GATC	1 cut(s)	671
DpnII	GATC	1 cut(s)	669
DraI	TTTAAA	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	171, 179
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	319
FaeI	CATG	2 cut(s)	97, 363
FalI	AAGNNNNNCTT	6 cut(s)	542, 574, 607, 639, 729, 761
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	93, 359
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	5 cut(s)	12, 105, 282, 711, 768
FokI	GGATG	3 cut(s)	551, 605, 636
Fsp4HI	GCNGC	5 cut(s)	12, 105, 282, 711, 768
FspAI	RTGCGCAY	1 cut(s)	758
FspBI	CTAG	3 cut(s)	5, 201, 398
FspI	TGCGCA	1 cut(s)	758
GlaI	GCGC	2 cut(s)	370, 758
GluI	GCNGC	5 cut(s)	12, 105, 282, 711, 768
GsaI	CCCAGC	2 cut(s)	437, 441
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	612
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	2 cut(s)	371, 759
Hin1II	CATG	2 cut(s)	97, 363
Hin6I	GCGC	2 cut(s)	369, 757
HinP1I	GCGC	2 cut(s)	369, 757
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HinfI	GANTC	5 cut(s)	413, 517, 529, 698, 718
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	1 cut(s)	612
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	2 cut(s)	327, 489
Hpy188I	TCNGA	3 cut(s)	528, 681, 723
Hpy188III	TCNNGA	6 cut(s)	21, 136, 189, 290, 410, 559
Hpy8I	GTNNAC	2 cut(s)	327, 489
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	195, 634
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	5 cut(s)	14, 104, 172, 317, 781
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 230, 239, 243, 248, 257, 266, 787
HpyF3I	CTNAG	3 cut(s)	238, 475, 525
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	2 cut(s)	97, 363
HspAI	GCGC	2 cut(s)	369, 757
KpnI	GGTACC	1 cut(s)	93
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	669
Lsp1109I	GCAGC	2 cut(s)	116, 293
LweI	GCATC	5 cut(s)	116, 139, 159, 283, 529
MaeI	CTAG	3 cut(s)	5, 201, 398
MaeII	ACGT	1 cut(s)	785
MalI	GATC	1 cut(s)	671
MboI	GATC	1 cut(s)	669
MboII	GAAGA	2 cut(s)	172, 679
MfeI	CAATTG	1 cut(s)	213
MluCI	AATT	3 cut(s)	213, 301, 342
MlyI	GAGTC	2 cut(s)	511, 727
MmeI	TCCRAC	2 cut(s)	56, 701
MnlI	CCTC	5 cut(s)	216, 472, 531, 534, 745
Mph1103I	ATGCAT	1 cut(s)	319
MseI	TTAA	5 cut(s)	122, 305, 335, 488, 545
MspA1I	CMGCKG	2 cut(s)	284, 437
MspCI	CTTAAG	1 cut(s)	544
MspI	CCGG	1 cut(s)	612
MspR9I	CCNGG	1 cut(s)	220
MunI	CAATTG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	8 cut(s)	110, 230, 239, 243, 248, 257, 266, 787
NdeII	GATC	1 cut(s)	669
NlaIII	CATG	2 cut(s)	97, 363
NlaIV	GGNNCC	2 cut(s)	91, 442
NsbI	TGCGCA	1 cut(s)	758
NsiI	ATGCAT	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	3 cut(s)	413, 529, 698
PkrI	GCNGC	5 cut(s)	13, 106, 283, 712, 769
PleI	GAGTC	2 cut(s)	511, 726
PpsI	GAGTC	2 cut(s)	511, 726
PpuMI	RGGWCCY	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	2 cut(s)	433, 437
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	2 cut(s)	91, 442
PspPI	GGNCC	1 cut(s)	441
PspPPI	RGGWCCY	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	110
PvuII	CAGCTG	2 cut(s)	284, 437
RsaI	GTAC	2 cut(s)	91, 404
RsaNI	GTAC	2 cut(s)	90, 403
SaqAI	TTAA	5 cut(s)	122, 305, 335, 488, 545
SatI	GCNGC	5 cut(s)	12, 105, 282, 711, 768
Sau3AI	GATC	1 cut(s)	669
Sau96I	GGNCC	1 cut(s)	441
SchI	GAGTC	2 cut(s)	511, 727
ScrFI	CCNGG	1 cut(s)	220
SetI	ASST	9 cut(s)	132, 187, 244, 286, 439, 446, 645, 756, 788
SfaNI	GCATC	5 cut(s)	116, 139, 159, 283, 529
SfcI	CTRYAG	1 cut(s)	791
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	3 cut(s)	213, 301, 342
SseBI	AGGCCT	1 cut(s)	205
SsiI	CCGC	2 cut(s)	710, 767
SspMI	CTAG	3 cut(s)	5, 201, 398
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	3 cut(s)	57, 135, 411
TasI	AATT	3 cut(s)	213, 301, 342
TauI	GCSGC	2 cut(s)	713, 770
TfiI	GAWTC	3 cut(s)	413, 529, 698
Tru1I	TTAA	5 cut(s)	122, 305, 335, 488, 545
Tru9I	TTAA	5 cut(s)	122, 305, 335, 488, 545
TscAI	CASTG	2 cut(s)	253, 710
TseI	GCWGC	3 cut(s)	11, 104, 281
TspDTI	ATGAA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	253, 710
Vha464I	CTTAAG	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XmiI	GTMKAC	1 cut(s)	326
XspI	CTAG	3 cut(s)	5, 201, 398
Zsp2I	ATGCAT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.