Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Reverse (-)

14883307 .. 14884591

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTCATGGAGCAAGGAATTAGAGGTTTCTTTAGGGCTTGGGCGCCCACTTTGATTGGTTACAGTGCTCAGGGTGCCGGCAAGTACGGCCTCTACGAGTTCTTTGCCGTTCGCCAGAGGTTGTACAAAGGGATTATTCCTCTTTGGGGACGCCAAATTCCTTATACAATGATGAAATTTTCAACTTTCGAGAAATTTGTCGAGCTCACTTACAAGCATGTGATCCCAACACCGAAAGAGCAGTGCAACACACCCTTGCAGCTCGGAGTGAGCTTTGCGTGTGGATATGTGGCTGGTGTGTTCTGTGATGTTGTTTCACACCCTGCTGATAACTTGGTGTCTTTCCTCAACAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

9.07

Isoelectric Point (pI)

17.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 74
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	156, 176, 194
AcyI	GRCGYC	2 cut(s)	44, 151
AfaI	GTAC	2 cut(s)	86, 125
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	183
AluBI	AGCT	3 cut(s)	205, 262, 273
AluI	AGCT	3 cut(s)	205, 262, 273
Alw21I	GWGCWC	2 cut(s)	70, 207
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	3 cut(s)	156, 176, 194
AspLEI	GCGC	1 cut(s)	46
BanI	GGYRCC	2 cut(s)	43, 74
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	70, 207
BbvI	GCAGC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	92, 103
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BfaI	CTAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	47
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	45, 76
Bpu10I	CCTNAGC	1 cut(s)	69
BsaHI	GRCGYC	2 cut(s)	44, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	271
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	43, 74
BsiHKAI	GWGCWC	2 cut(s)	70, 207
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	70, 207
Bsp1407I	TGTACA	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	45, 76
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	2 cut(s)	43, 74
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	1 cut(s)	222
BssNI	GRCGYC	2 cut(s)	44, 151
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	2 cut(s)	44, 151
BstAUI	TGTACA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 87
BstNSI	RCATGY	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	90
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	70, 248
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	77
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	85, 124
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	2 cut(s)	7, 218
CviJI	RGCY	6 cut(s)	38, 90, 205, 262, 273, 293
CviKI_1	RGCY	6 cut(s)	38, 90, 205, 262, 273, 293
CviQI	GTAC	2 cut(s)	85, 124
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
FaeI	CATG	2 cut(s)	10, 221
FaiI	YATR	4 cut(s)	8, 165, 219, 288
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	2 cut(s)	6, 217
Fnu4HI	GCNGC	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	2 cut(s)	44, 151
Hin1II	CATG	2 cut(s)	10, 221
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	78
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	246, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 87
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	2 cut(s)	44, 151
Hsp92II	CATG	2 cut(s)	10, 221
HspAI	GCGC	1 cut(s)	44
KasI	GGCGCC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	5 cut(s)	56, 91, 128, 279, 336
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	70, 207
MluCI	AATT	4 cut(s)	18, 156, 176, 194
Mly113I	GGCGCC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	17, 101, 111, 150, 356
MroNI	GCCGGC	1 cut(s)	77
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	74, 87
NaeI	GCCGGC	1 cut(s)	79
NarI	GGCGCC	1 cut(s)	44
NdeII	GATC	1 cut(s)	222
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	2 cut(s)	10, 221
NlaIV	GGNNCC	2 cut(s)	45, 76
NspI	RCATGY	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	261
PluTI	GGCGCC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	45, 76
RsaI	GTAC	2 cut(s)	86, 125
RsaNI	GTAC	2 cut(s)	85, 124
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	70, 207
SetI	ASST	5 cut(s)	28, 122, 207, 264, 275
SfoI	GGCGCC	1 cut(s)	45
Sse9I	AATT	4 cut(s)	18, 156, 176, 194
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	358
SstI	GAGCTC	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	2 cut(s)	189, 201
TasI	AATT	4 cut(s)	18, 156, 176, 194
TatI	WGTACW	1 cut(s)	123
TscAI	CASTG	2 cut(s)	70, 248
TseI	GCWGC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	70, 248
XapI	RAATTY	3 cut(s)	156, 176, 194
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.