Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003118

Physical Location & Seq

Genomic Coordinates Forward (+)

24194658 .. 24198460

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1149100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTGAGCACCGGATTCACTCACACGGCTGTCACGCCTATCGATGTCATCAAGTGTAATATGCAGGGCATAAGAGGTTTCTTCAAAGGTTGGGCACCAACTTTTGTTGGTTACAGTGCTCAGGGTGGCAAGTTCGGATTCTACGAGTTTTTCAAGAAGTACTACTCAGACATTGCTGGCCCCGAGTATGCAGTCAAGTACAAAACATTGATCTACCTTGCAAGTTCTGCATCAGCTGAAGTCATTGCCGATGTTGCCCTCTGTCCTATGGAAGCCGTCAAAGTTCGTGTCCAAACTCAGCCCGGTTTTGCCAGAGGCTTGGCTGATGGCCTTCCGAAGATCATCAAATCCGAAGGCGCTCTTGGGTTGTATAAAGGGATGGTTCCGCTTTGGGGACGTCAGGTTCCTTATACTATGATGAAATTTGCATCTTTTGAGACTACTATCGAGCTCATGTACAAGCATGTAATCTCAACACCTAAAGAGCAATGCAGCACACCCTTGCAGCTAGGTGTGAGCTTTGTTAGTAGGTATATTGCTAGTGTGTTCTGTGCTGTTGTCTCACACCCAGCTAACAACTTGGTCTCCTTCCTCAACAACGCAAGGGGAGCAATCGTTGGCGATGCTGTGAAGAATCTGGGACTATTAGGTATTTTCACCCGAGGCCTTCCTCTGCGTATCTTCATGATCGGAACCCTAACCGGAGGTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

238

Amino Acids

25.75

Weight (kDa)

9.48

Isoelectric Point (pI)

17.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	22 - 57	2.3e-06	Mitochondrial carrier protein
Mito_carr	PF00153	67 - 155	5e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48850
fragaria_vesca	FvH4_5g09180
malus_domestica	MD06G1133000.v1.1 MD14G1149100.v1.1 MD14G1149200.v1.1
prunus_persica	Prupe.5G143800_v2.0.a1 Prupe.5G143800_v2.0.a1 Prupe.5G144200_v2.0.a1
pyrus_communis	pycom06g12440 pycom14g12400
rosa_chinensis	RchiOBHm_Chr3g0469101 RchiOBHm_Chr7g0189001
rosa_laevigata	RLG00000004644 RLG00000024373 RLG00000024376 RLG00000024384 RLG00000024387
rosa_multiflora	Rmu_sc0000302.1_g000019 Rmu_sc0000302.1_g000040 Rmu_sc0007139.1_g000006 Rmu_sc0007933.1_g000010 Rmu_sc0008582.1_g000005
rosa_roxburghii	Rroxscaffold_3G00265880 Rroxscaffold_6G00412220
rosa_rugosa	Rorug03G0099100 Rorug03G0099100 Rorug03G0099500 Rorug03G0099600 Rorug06G0495300
rosa_samantha	Rh3DG203500 Rh7AG100000 Rh7BG102200 Rh7CG103500 Rh7DG102000
rosa_wichuraiana	Rw3G014010 Rw3G014030 Rw7G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	94
AciI	CCGC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	422
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	3 cut(s)	161, 200, 458
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	2 cut(s)	85, 154
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	5 cut(s)	236, 451, 508, 519, 572
AluI	AGCT	5 cut(s)	236, 451, 508, 519, 572
Alw21I	GWGCWC	3 cut(s)	11, 121, 453
Alw26I	GTCTC	3 cut(s)	431, 565, 589
Ama87I	CYCGRG	2 cut(s)	182, 660
AoxI	GGCC	3 cut(s)	178, 328, 664
ApeKI	GCWGC	2 cut(s)	492, 505
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspLEI	GCGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	649
AvaI	CYCGRG	2 cut(s)	182, 660
BaeGI	GKGCMC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	3 cut(s)	11, 121, 453
BbvI	GCAGC	2 cut(s)	504, 517
BccI	CCATC	2 cut(s)	320, 373
BceAI	ACGGC	2 cut(s)	42, 260
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	3 cut(s)	431, 565, 589
BfaI	CTAG	2 cut(s)	509, 540
BfoI	RGCGCY	1 cut(s)	360
BisI	GCNGC	2 cut(s)	493, 506
BlsI	GCNGC	2 cut(s)	494, 507
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	303
BmeT110I	CYCGRG	2 cut(s)	182, 660
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	5 cut(s)	96, 181, 384, 405, 694
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	3 cut(s)	239, 437, 613
Bpu10I	CCTNAGC	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	589
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	2 cut(s)	11, 701
BsaXI	ACNNNNNCTCC	4 cut(s)	569, 599, 600, 630
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse3DI	GCAATG	3 cut(s)	171, 243, 494
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	3 cut(s)	171, 243, 494
BseMII	CTCAG	3 cut(s)	134, 180, 311
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	504, 517
BseYI	CCCAGC	1 cut(s)	568
BshFI	GGCC	3 cut(s)	180, 330, 666
BshNI	GGYRCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	3 cut(s)	11, 121, 453
BsiHKCI	CYCGRG	2 cut(s)	182, 660
BsiSI	CCGG	3 cut(s)	12, 303, 702
BslFI	GGGAC	2 cut(s)	408, 654
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	3 cut(s)	431, 565, 589
BsmFI	GGGAC	2 cut(s)	408, 654
BsnI	GGCC	3 cut(s)	180, 330, 666
Bso31I	GGTCTC	1 cut(s)	589
BsoBI	CYCGRG	2 cut(s)	182, 660
Bsp1286I	GDGCHC	4 cut(s)	11, 97, 121, 453
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	210, 339, 687
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	3 cut(s)	180, 330, 666
BspCNI	CTCAG	3 cut(s)	133, 179, 310
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	5 cut(s)	96, 181, 384, 405, 694
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	589
BsrDI	GCAATG	3 cut(s)	171, 243, 494
BsrGI	TGTACA	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	3 cut(s)	210, 339, 687
BssNI	GRCGYC	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	397
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	120, 166, 297
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	213, 342, 690
BstMAI	GTCTC	3 cut(s)	431, 565, 589
BstMBI	GATC	3 cut(s)	210, 339, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 254, 608
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	504, 517
BstXI	CCANNNNNNTGG	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	180, 330, 666
BsuTUI	ATCGAT	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	160, 199, 457
CviAII	CATG	3 cut(s)	454, 464, 685
CviQI	GTAC	3 cut(s)	160, 199, 457
DdeI	CTNAG	3 cut(s)	120, 166, 297
DpnI	GATC	3 cut(s)	212, 341, 689
DpnII	GATC	3 cut(s)	210, 339, 687
Ecl136II	GAGCTC	1 cut(s)	451
Eco147I	AGGCCT	1 cut(s)	666
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	2 cut(s)	182, 660
EcoICRI	GAGCTC	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	3 cut(s)	457, 467, 688
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	408, 654
FatI	CATG	3 cut(s)	453, 463, 684
Fnu4HI	GCNGC	2 cut(s)	493, 506
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	493, 506
FspBI	CTAG	2 cut(s)	509, 540
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	493, 506
GsaI	CCCAGC	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	3 cut(s)	180, 330, 666
HapII	CCGG	3 cut(s)	12, 303, 702
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	457, 467, 688
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	15, 138, 634
HpaII	CCGG	3 cut(s)	12, 303, 702
HphI	GGTGA	1 cut(s)	649
Hpy188I	TCNGA	5 cut(s)	137, 169, 336, 352, 692
Hpy188III	TCNNGA	2 cut(s)	154, 685
HpyAV	CCTTC	4 cut(s)	341, 347, 598, 677
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	7 cut(s)	64, 191, 221, 230, 428, 492, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 254, 608
HpyF3I	CTNAG	3 cut(s)	120, 166, 297
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	457, 467, 688
HspAI	GCGC	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	210, 339, 687
LmnI	GCTCC	1 cut(s)	608
LpnPI	CCDG	9 cut(s)	25, 50, 107, 162, 316, 325, 386, 582, 623
Lsp1109I	GCAGC	2 cut(s)	504, 517
LweI	GCATC	3 cut(s)	239, 437, 613
MaeI	CTAG	2 cut(s)	509, 540
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	31, 110
MalI	GATC	3 cut(s)	212, 341, 689
MboI	GATC	3 cut(s)	210, 339, 687
MboII	GAAGA	4 cut(s)	73, 349, 643, 673
MhlI	GDGCHC	4 cut(s)	11, 97, 121, 453
MluCI	AATT	1 cut(s)	422
MnlI	CCTC	7 cut(s)	68, 269, 308, 602, 656, 681, 698
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	3 cut(s)	12, 303, 702
MspR9I	CCNGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	227, 254, 608
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	3 cut(s)	210, 339, 687
NlaIII	CATG	3 cut(s)	457, 467, 688
NlaIV	GGNNCC	5 cut(s)	96, 181, 384, 405, 694
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	1 cut(s)	684
PceI	AGGCCT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	15, 138, 634
PkrI	GCNGC	2 cut(s)	494, 507
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	568
PspN4I	GGNNCC	5 cut(s)	96, 181, 384, 405, 694
PspPI	GGNCC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	161, 200, 458
RsaNI	GTAC	3 cut(s)	160, 199, 457
SacI	GAGCTC	1 cut(s)	453
SatI	GCNGC	2 cut(s)	493, 506
Sau3AI	GATC	3 cut(s)	210, 339, 687
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	4 cut(s)	11, 97, 121, 453
SfaNI	GCATC	3 cut(s)	239, 437, 613
Sse9I	AATT	1 cut(s)	422
SseBI	AGGCCT	1 cut(s)	666
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	509, 540
SstI	GAGCTC	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	42, 447
TasI	AATT	1 cut(s)	422
TatI	WGTACW	3 cut(s)	159, 198, 456
TfiI	GAWTC	3 cut(s)	15, 138, 634
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	492, 505
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	434, 673
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	467
XspI	CTAG	2 cut(s)	509, 540
ZraI	GACGTC	1 cut(s)	398
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.