FvH4_5g14640

Galactoside 2-alpha-L-fucosyltransferase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
8297121 .. 8300264
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14640.t1

Sequence Viewer

Length: 1716 bp
ATGAAGAGGTTCAGTAAAACCCTGAACGGTGATGATCCATCAAACAACTCGGATTCGGGTACCCGTAATGCTCTGAAAGACCCGGATAGGAACGCCGGGTTGAGCCCAATGAGGGTGATGGGGATCTTTATAGCTTGCTTGATTCTGTTTTCGGTGTTGTTCTCAGTCAGTGTGGTTCTCAGAGACCCACCTTCTAATGCTGCTGTTCATGAAGCTTTAAAGGCTGGAGTTCTTGAAGTTGAACCCAGAAAAAGTTTGGACGATCAAATTTCTGATCATGTAGAGGTACCAAAGGATAAGATGCTTGGCGGCCTTCTTGCTGCTGGATTTGATGAAGGATCTTGTGTCAGCAGGTACCAGTCAGCTTCTTACCGTAAAGAAATGCCACACAAACCTTCTTCTCACCTTTTATCCAGGTTAAGAAGGTATGAAGCTCTTCATAAGCGTTGTGGACCTAATACTGAATCCTACAACAAAGCCGTAGAACAACTCAAGTCTGGTCGTCGTCTGACCTCCTCGGATTGTAACTATGTGGTATGGATTTCTTATAGTGGATTAGGGAATAGAATACTTACATTAGCTTCAGCATTTCTTTATGCTCTCCTGACAAACCGGGTACTGCTAGTGGATCCTGGAGTGGACATGGTTGATCTATTCTGCGAACCATTTCCAGAAGCCTCATGGTTCCTCCCCATGGATTTCCCCCTTAAAAACCAGTTTGACAGCTTGGATCAGAAATCTCCACATTGTTATGGGGAAATGGTGAGGAAGAGCAACCTCACAAATAGCGAGCAGTCACTGCTGTCATCTTTTGTGTATCTCCATCTATCACATGATTATAATGATCAAGATAAGCTTTTCTTCTGCAATCAAGATCAAGATTTTCTCGAAAAGATACCGTGGTTGATCGTGAGGACGGATAACTATTTTGTCCCATCTCTTTTCTTGATCCCATCTTTTGAGCAAGAACTCAATAGTCTCTTTCCAAGGAAAGAAACAGTGTTCCATTTCCTGGGTCGTTACCTGTTCCATCCCACAAATGTGGTATGGGGACTTATTACTAGATACTATCAGGCATATTTAGCTAATGCAGATGAAAGAATAGGCATCCAGATCAGAGTCTTTGATACTGGGACTGGTCCATTTCAACATGTGTTTGATCAGATCATATCCTGTGCATTGAAGGAGAATCTGTTACCAGAAACTAACAGGCAGGACCTCATAGTCCGTCCATCAGGAGCTGCTAAGTCTAAAGCTGTGCTAATGACTTCTTTAAGCTCTGGATACTTTGAGAAGCTGAGGGACATGTATTGGGAGCATCCTACTGTGACTGGAGAGGTAATTGGCATTTACCAGCCTAGTCATGAGGAGTATCAACAAACTGAGAAGCATACGCACAACCGAAAGGCATTGGCTGAAATGTATTTGCTAAGCTTAACGGATGTGTTGATCACAAGCTCATGGTCGACTTTTGGTTATGTGGCACAGAGTCTAGGTGGGCTGACGCCATGGATACTCTACAAACCGGAAAACAGGACAGCCCCTGATCCTGCTTGTAAGCGAGCAATGTCAATGGAGCCGTGCTTTCACGCACCTCCCTTCTACGATTGCAAGGCCAAAACAGGAGTTGACACAGGTGAACTAGTTCCTCATGTGAGGCATTGTGAGGATATGAGTTGGGGTCTTAAATTGATCGATCCATCCGATGAGTTGTAG

Protein Analysis

572

Amino Acids

64.81

Weight (kDa)

6.07

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XG_FTase PF03254 91 - 538 7.6e-228 Xyloglucan fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AasI GACNNNNNNGTC 1 cut(s) 1223
Acc36I ACCTGC 1 cut(s) 342
Acc65I GGTACC 3 cut(s) 59, 286, 354
AccB1I GGYRCC 3 cut(s) 59, 286, 354
AccB7I CCANNNNNTGG 1 cut(s) 1012
AccI GTMKAC 1 cut(s) 1466
AciI CCGC 1 cut(s) 309
AclWI GGATC 9 cut(s) 29, 131, 346, 623, 636, 738, 943, 1541, 1691
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 1505
AfaI GTAC 4 cut(s) 61, 288, 356, 618
AfiI CCNNNNNNNGG 3 cut(s) 112, 694, 1012
AflIII ACRYGT 2 cut(s) 1150, 1305
AgsI TTSAA 4 cut(s) 236, 242, 1148, 1183
AhlI ACTAGT 1 cut(s) 1642
AjnI CCWGG 3 cut(s) 413, 631, 1011
AleI CACNNNNGTG 1 cut(s) 1040
Alw26I GTCTC 2 cut(s) 177, 983
AlwI GGATC 9 cut(s) 29, 131, 346, 623, 636, 738, 943, 1541, 1691
AlwNI CAGNNNCTG 3 cut(s) 799, 1241, 1544
AoxI GGCC 2 cut(s) 310, 1614
ApeKI GCWGC 3 cut(s) 200, 320, 1241
ApoI RAATTY 1 cut(s) 267
Asp700I GAANNNNTTC 4 cut(s) 8, 435, 666, 1644
Asp718I GGTACC 3 cut(s) 59, 286, 354
AspS9I GGNCC 3 cut(s) 452, 1139, 1216
AsuC2I CCSGG 3 cut(s) 83, 97, 614
AsuHPI GGTGA 5 cut(s) 41, 127, 395, 775, 1649
AvaII GGWCC 3 cut(s) 452, 1139, 1216
BaeI ACNNNNGTAYC 2 cut(s) 887, 920
BamHI GGATCC 1 cut(s) 628
BanI GGYRCC 3 cut(s) 59, 286, 354
BanII GRGCYC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 1298
BbvI GCAGC 3 cut(s) 187, 307, 1228
BccI CCATC 8 cut(s) 46, 112, 831, 943, 961, 1038, 1240, 1708
BceAI ACGGC 2 cut(s) 464, 1564
BciT130I CCWGG 3 cut(s) 415, 633, 1013
BciVI GTATCC 2 cut(s) 1277, 1506
BclI TGATCA 4 cut(s) 274, 844, 1159, 1449
BcnI CCSGG 3 cut(s) 83, 97, 614
BcoDI GTCTC 2 cut(s) 177, 983
BcuI ACTAGT 1 cut(s) 1642
BfaI CTAG 5 cut(s) 623, 1062, 1359, 1493, 1643
BfuAI ACCTGC 1 cut(s) 342
BfuI GTATCC 2 cut(s) 1277, 1506
BisI GCNGC 4 cut(s) 201, 310, 321, 1242
BlpI GCTNAGC 1 cut(s) 1430
BlsI GCNGC 4 cut(s) 202, 311, 322, 1243
Bme1390I CCNGG 6 cut(s) 83, 97, 415, 614, 633, 1013
Bme18I GGWCC 3 cut(s) 452, 1139, 1216
BmgT120I GGNCC 3 cut(s) 452, 1139, 1216
BmiI GGNNCC 6 cut(s) 61, 288, 356, 630, 686, 1578
BmrFI CCNGG 6 cut(s) 83, 97, 415, 614, 633, 1013
BmrI ACTGGG 1 cut(s) 1140
BmsI GCATC 3 cut(s) 291, 1116, 1327
BmuI ACTGGG 1 cut(s) 1140
BpmI CTGGAG 3 cut(s) 246, 654, 1353
Bpu10I CCTNAGC 1 cut(s) 1298
Bpu1102I GCTNAGC 1 cut(s) 1430
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 3 cut(s) 83, 97, 614
Bsa29I ATCGAT 1 cut(s) 1695
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 1505
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 6 cut(s) 516, 693, 899, 986, 1012, 1508
BsaWI WCCGGW 1 cut(s) 1525
BsaXI ACNNNNNCTCC 2 cut(s) 1178, 1208
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 694, 1012
Bse1I ACTGG 5 cut(s) 358, 715, 1135, 1141, 1336
Bse3DI GCAATG 1 cut(s) 1572
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 3 cut(s) 415, 633, 1013
BseCI ATCGAT 1 cut(s) 1695
BseDI CCNNGG 6 cut(s) 516, 693, 899, 986, 1012, 1508
BseGI GGATG 5 cut(s) 1030, 1107, 1318, 1447, 1700
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 112, 694, 1012
BseMI GCAATG 1 cut(s) 1572
BseMII CTCAG 4 cut(s) 177, 193, 1289, 1374
BseNI ACTGG 5 cut(s) 358, 715, 1135, 1141, 1336
BseRI GAGGAG 2 cut(s) 505, 1382
BseXI GCAGC 3 cut(s) 187, 307, 1228
BshFI GGCC 2 cut(s) 312, 1616
BshNI GGYRCC 3 cut(s) 59, 286, 354
BshVI ATCGAT 1 cut(s) 1695
BsiSI CCGG 4 cut(s) 83, 96, 613, 1526
BslFI GGGAC 4 cut(s) 917, 1065, 1147, 1316
BslI CCNNNNNNNGG 3 cut(s) 112, 694, 1012
BsmAI GTCTC 2 cut(s) 177, 983
BsmFI GGGAC 4 cut(s) 917, 1065, 1147, 1316
BsnI GGCC 2 cut(s) 312, 1616
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 107
Bsp1720I GCTNAGC 1 cut(s) 1430
Bsp19I CCATGG 2 cut(s) 693, 1508
BspACI CCGC 1 cut(s) 309
BspANI GGCC 2 cut(s) 312, 1616
BspCNI CTCAG 4 cut(s) 176, 192, 1290, 1375
BspDI ATCGAT 1 cut(s) 1695
BspHI TCATGA 2 cut(s) 208, 1363
BspLI GGNNCC 6 cut(s) 61, 288, 356, 630, 686, 1578
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 9 cut(s) 29, 131, 346, 623, 636, 738, 943, 1541, 1691
BspQI GCTCTTC 2 cut(s) 441, 764
BspT107I GGYRCC 3 cut(s) 59, 286, 354
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 1572
BsrI ACTGG 5 cut(s) 358, 715, 1135, 1141, 1336
BssECI CCNNGG 6 cut(s) 516, 693, 899, 986, 1012, 1508
BssNI GRCGYC 1 cut(s) 1505
BssT1I CCWWGG 3 cut(s) 693, 986, 1508
Bst2UI CCWGG 3 cut(s) 415, 633, 1013
Bst4CI ACNGT 5 cut(s) 29, 374, 900, 1000, 1327
Bst6I CTCTTC 2 cut(s) 441, 764
BstACI GRCGYC 1 cut(s) 1505
BstAPI GCANNNNNTGC 1 cut(s) 799
BstC8I GCNNGC 3 cut(s) 136, 791, 1563
BstDEI CTNAG 6 cut(s) 163, 179, 1245, 1298, 1383, 1430
BstDSI CCRYGG 3 cut(s) 693, 899, 1508
BstF5I GGATG 5 cut(s) 1030, 1107, 1318, 1447, 1700
BstMAI GTCTC 2 cut(s) 177, 983
BstMWI GCNNNNNNNGC 3 cut(s) 221, 799, 1082
BstNI CCWGG 3 cut(s) 415, 633, 1013
BstNSI RCATGY 2 cut(s) 1154, 1309
BstSCI CCNGG 6 cut(s) 81, 95, 413, 612, 631, 1011
BstV1I GCAGC 3 cut(s) 187, 307, 1228
BstX2I RGATCY 3 cut(s) 123, 338, 628
BstXI CCANNNNNNTGG 1 cut(s) 1042
BstYI RGATCY 3 cut(s) 123, 338, 628
Bsu15I ATCGAT 1 cut(s) 1695
BsuI GTATCC 2 cut(s) 1277, 1506
BsuRI GGCC 2 cut(s) 312, 1616
BsuTUI ATCGAT 1 cut(s) 1695
BtgI CCRYGG 3 cut(s) 693, 899, 1508
BtsCI GGATG 5 cut(s) 1030, 1107, 1318, 1447, 1700
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 3 cut(s) 175, 797, 1005
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 3 cut(s) 136, 791, 1563
CaiI CAGNNNCTG 3 cut(s) 799, 1241, 1544
CciI TCATGA 2 cut(s) 208, 1363
Cfr13I GGNCC 3 cut(s) 452, 1139, 1216
ClaI ATCGAT 1 cut(s) 1695
CseI GACGC 1 cut(s) 1513
Csp6I GTAC 4 cut(s) 60, 287, 355, 617
CviQI GTAC 4 cut(s) 60, 287, 355, 617
DdeI CTNAG 6 cut(s) 163, 179, 1245, 1298, 1383, 1430
DraI TTTAAA 1 cut(s) 219
DrdI GACNNNNNNGTC 1 cut(s) 1223
DseDI GACNNNNNNGTC 1 cut(s) 1223
Eam1104I CTCTTC 2 cut(s) 441, 764
EarI CTCTTC 2 cut(s) 441, 764
Eco130I CCWWGG 3 cut(s) 693, 986, 1508
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 3 cut(s) 452, 1139, 1216
Eco57I CTGAAG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 1216
EcoRII CCWGG 3 cut(s) 413, 631, 1011
EcoT14I CCWWGG 3 cut(s) 693, 986, 1508
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 3 cut(s) 693, 986, 1508
FalI AAGNNNNNCTT 4 cut(s) 840, 872, 845, 877
FaqI GGGAC 4 cut(s) 917, 1065, 1147, 1316
FbaI TGATCA 4 cut(s) 274, 844, 1159, 1449
FblI GTMKAC 1 cut(s) 1466
Fnu4HI GCNGC 4 cut(s) 201, 310, 321, 1242
FokI GGATG 5 cut(s) 1017, 1094, 1305, 1454, 1687
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 4 cut(s) 201, 310, 321, 1242
FspBI CTAG 5 cut(s) 623, 1062, 1359, 1493, 1643
GluI GCNGC 4 cut(s) 201, 310, 321, 1242
GsuI CTGGAG 3 cut(s) 246, 654, 1353
HaeIII GGCC 2 cut(s) 312, 1616
HapII CCGG 4 cut(s) 83, 96, 613, 1526
HgaI GACGC 1 cut(s) 1513
Hin1I GRCGYC 1 cut(s) 1505
HincII GTYRAC 2 cut(s) 1467, 1630
HindII GTYRAC 2 cut(s) 1467, 1630
HindIII AAGCTT 3 cut(s) 213, 854, 1432
HinfI GANTC 6 cut(s) 53, 142, 464, 1119, 1189, 1489
HpaII CCGG 4 cut(s) 83, 96, 613, 1526
HphI GGTGA 5 cut(s) 41, 127, 395, 775, 1649
Hpy166II GTNNAC 5 cut(s) 452, 640, 1467, 1630, 1640
Hpy8I GTNNAC 5 cut(s) 452, 640, 1467, 1630, 1640
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 7 cut(s) 201, 323, 329, 405, 417, 1177, 1609
HpyCH4III ACNGT 5 cut(s) 29, 374, 900, 1000, 1327
HpyCH4V TGCA 4 cut(s) 867, 1091, 1178, 1611
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 799, 1082
HpyF3I CTNAG 6 cut(s) 163, 179, 1245, 1298, 1383, 1430
Hsp92I GRCGYC 1 cut(s) 1505
KpnI GGTACC 3 cut(s) 63, 290, 358
Ksp22I TGATCA 4 cut(s) 274, 844, 1159, 1449
LguI GCTCTTC 2 cut(s) 441, 764
LmnI GCTCC 3 cut(s) 1238, 1315, 1576
Lsp1109I GCAGC 3 cut(s) 187, 307, 1228
LweI GCATC 3 cut(s) 291, 1116, 1327
MaeI CTAG 5 cut(s) 623, 1062, 1359, 1493, 1643
MaeIII GTNAC 5 cut(s) 524, 795, 1019, 1194, 1327
MboII GAAGA 5 cut(s) 16, 390, 428, 781, 853
MflI RGATCY 3 cut(s) 123, 338, 628
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 267, 1341, 1688
MlyI GAGTC 2 cut(s) 1128, 1498
MroXI GAANNNNTTC 4 cut(s) 8, 435, 666, 1644
MseI TTAA 6 cut(s) 218, 419, 708, 1274, 1436, 1686
MslI CAYNNNNRTG 2 cut(s) 750, 1040
MspI CCGG 4 cut(s) 83, 96, 613, 1526
MspR9I CCNGG 6 cut(s) 83, 97, 415, 614, 633, 1013
MvaI CCWGG 3 cut(s) 415, 633, 1013
MwoI GCNNNNNNNGC 3 cut(s) 221, 799, 1082
NciI CCSGG 3 cut(s) 83, 97, 614
NcoI CCATGG 2 cut(s) 693, 1508
NlaIV GGNNCC 6 cut(s) 61, 288, 356, 630, 686, 1578
NmuCI GTSAC 2 cut(s) 795, 1327
NspI RCATGY 2 cut(s) 1154, 1309
OliI CACNNNNGTG 1 cut(s) 1040
PagI TCATGA 2 cut(s) 208, 1363
PciI ACATGT 2 cut(s) 1150, 1305
PciSI GCTCTTC 2 cut(s) 441, 764
PcsI WCGNNNNNNNCGW 1 cut(s) 1701
PdmI GAANNNNTTC 4 cut(s) 8, 435, 666, 1644
PfeI GAWTC 4 cut(s) 53, 142, 464, 1189
PflMI CCANNNNNTGG 1 cut(s) 1012
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 4 cut(s) 202, 311, 322, 1243
PleI GAGTC 2 cut(s) 1127, 1497
PpsI GAGTC 2 cut(s) 1127, 1497
PpuMI RGGWCCY 1 cut(s) 1216
PscI ACATGT 2 cut(s) 1150, 1305
PsiI TTATAA 1 cut(s) 840
Psp5II RGGWCCY 1 cut(s) 1216
Psp6I CCWGG 3 cut(s) 413, 631, 1011
PspGI CCWGG 3 cut(s) 413, 631, 1011
PspN4I GGNNCC 6 cut(s) 61, 288, 356, 630, 686, 1578
PspPI GGNCC 3 cut(s) 452, 1139, 1216
PspPPI RGGWCCY 1 cut(s) 1216
PstNI CAGNNNCTG 3 cut(s) 799, 1241, 1544
PsuI RGATCY 3 cut(s) 123, 338, 628
RsaI GTAC 4 cut(s) 61, 288, 356, 618
RsaNI GTAC 4 cut(s) 60, 287, 355, 617
RseI CAYNNNNRTG 2 cut(s) 750, 1040
SalI GTCGAC 1 cut(s) 1465
SapI GCTCTTC 2 cut(s) 441, 764
SaqAI TTAA 6 cut(s) 218, 419, 708, 1274, 1436, 1686
SatI GCNGC 4 cut(s) 201, 310, 321, 1242
Sau96I GGNCC 3 cut(s) 452, 1139, 1216
SchI GAGTC 2 cut(s) 1128, 1498
ScrFI CCNGG 6 cut(s) 83, 97, 415, 614, 633, 1013
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 3 cut(s) 291, 1116, 1327
SinI GGWCC 3 cut(s) 452, 1139, 1216
SmiMI CAYNNNNRTG 2 cut(s) 750, 1040
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SpeI ACTAGT 1 cut(s) 1642
Sse9I AATT 3 cut(s) 267, 1341, 1688
SsiI CCGC 1 cut(s) 309
SspMI CTAG 5 cut(s) 623, 1062, 1359, 1493, 1643
StyD4I CCNGG 6 cut(s) 81, 95, 413, 612, 631, 1011
StyI CCWWGG 3 cut(s) 693, 986, 1508
TaaI ACNGT 5 cut(s) 29, 374, 900, 1000, 1327
TaqI TCGA 3 cut(s) 888, 1466, 1695
TasI AATT 3 cut(s) 267, 1341, 1688
TauI GCSGC 1 cut(s) 312
TfiI GAWTC 4 cut(s) 53, 142, 464, 1189
Tru1I TTAA 6 cut(s) 218, 419, 708, 1274, 1436, 1686
Tru9I TTAA 6 cut(s) 218, 419, 708, 1274, 1436, 1686
TscAI CASTG 3 cut(s) 175, 804, 1005
TseFI GTSAC 2 cut(s) 795, 1327
TseI GCWGC 3 cut(s) 200, 320, 1241
Tsp45I GTSAC 2 cut(s) 795, 1327
TspDTI ATGAA 7 cut(s) 17, 197, 225, 348, 428, 444, 1110
TspGWI ACGGA 3 cut(s) 932, 1217, 1454
TspRI CASTG 3 cut(s) 175, 804, 1005
Van91I CCANNNNNTGG 1 cut(s) 1012
VpaK11BI GGWCC 3 cut(s) 452, 1139, 1216
XapI RAATTY 1 cut(s) 267
XceI RCATGY 2 cut(s) 1154, 1309
XcmI CCANNNNNNNNNTGG 2 cut(s) 253, 678
XmiI GTMKAC 1 cut(s) 1466
XmnI GAANNNNTTC 4 cut(s) 8, 435, 666, 1644
XspI CTAG 5 cut(s) 623, 1062, 1359, 1493, 1643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.