Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

64409330 .. 64410334

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTTTTTGGCGATCTGTTGAGCTCAGGGTTTTCTTTTGTAATGAATCTGATGAAGATCTTTGCTTCTCTTCTGGTGTCTCTCCCAGTTCTCATAACTATCTCTCTTGTTCTTCGCGACCCACCTCCCGATCGGATCAAGGGTTTCGCAGACGCAAGGGTTTTGGAAACGCCGTCGTCTCCGGTTACCACCTCGTCGAATATTGAGATTTTCCGAAGACCAGCACCTGTCTCAAATATCACCTCGTCAAATTCAGCAGGTACCAATCAAGTTTCTACCGCAAAATCTCAACCCACAAACCATCTTCTTATCTTCTTTCAAGACTCAGAAGCTATGAAGAACTTCATAAACGGTGTGGGCCGAATTCCAAACCCTACAGCGCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

129

Amino Acids

13.95

Weight (kDa)

9.51

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	250, 363
AfaI	GTAC	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	320
AluBI	AGCT	2 cut(s)	24, 332
AluI	AGCT	2 cut(s)	24, 332
Alw21I	GWGCWC	1 cut(s)	26
Alw26I	GTCTC	3 cut(s)	84, 183, 235
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	358
ApoI	RAATTY	2 cut(s)	250, 363
Asp700I	GAANNNNTTC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	26
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	84, 183, 235
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	262
BmrI	ACTGGG	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	39, 339
BseNI	ACTGG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	1 cut(s)	360
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	3 cut(s)	84, 183, 235
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	13, 57, 130, 135
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	2 cut(s)	38, 338
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	4 cut(s)	13, 57, 130, 135
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	25, 325
BstEII	GGTNACC	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	4 cut(s)	16, 60, 133, 138
BstMAI	GTCTC	3 cut(s)	84, 183, 235
BstMBI	GATC	4 cut(s)	13, 57, 130, 135
BstMCI	CGRYCG	1 cut(s)	133
BstPI	GGTNACC	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	385
BtuMI	TCGCGA	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	248
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	358
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	261
CviJI	RGCY	3 cut(s)	24, 332, 360
CviKI_1	RGCY	3 cut(s)	24, 332, 360
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	25, 325
DpnI	GATC	4 cut(s)	15, 59, 132, 137
DpnII	GATC	4 cut(s)	13, 57, 130, 135
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	24
EcoO65I	GGTNACC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	183
FaiI	YATR	3 cut(s)	95, 335, 347
FriOI	GRGCYC	1 cut(s)	26
GlaI	GCGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	2 cut(s)	46, 323
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	51, 135, 215, 328
Hpy188III	TCNNGA	3 cut(s)	116, 128, 320
Hpy99I	CGWCG	2 cut(s)	178, 199
HpyCH4III	ACNGT	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	25, 325
HspAI	GCGC	1 cut(s)	380
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	13, 57, 130, 135
LpnPI	CCDG	7 cut(s)	12, 59, 99, 195, 234, 240, 243
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	4 cut(s)	15, 59, 132, 137
MboI	GATC	4 cut(s)	13, 57, 130, 135
MboII	GAAGA	7 cut(s)	62, 67, 104, 228, 296, 304, 349
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	2 cut(s)	250, 363
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	135, 202, 253
MroXI	GAANNNNTTC	1 cut(s)	341
MspI	CCGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	4 cut(s)	13, 57, 130, 135
NlaIV	GGNNCC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	46
Ple19I	CGATCG	1 cut(s)	133
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	26
PspEI	GGTNACC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	57
PvuI	CGATCG	1 cut(s)	133
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	13, 57, 130, 135
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	7 cut(s)	26, 127, 194, 229, 245, 262, 334
SfcI	CTRYAG	1 cut(s)	375
Sse9I	AATT	2 cut(s)	250, 363
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	1 cut(s)	202
SstI	GAGCTC	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	250, 363
TfiI	GAWTC	1 cut(s)	46
TspDTI	ATGAA	4 cut(s)	59, 68, 334, 350
XapI	RAATTY	2 cut(s)	250, 363
XmnI	GAANNNNTTC	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.