Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

3833602 .. 3834340

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATCTGAGAGAATCCAACAGCAGGAGGCGACTTTCACCGCAACCGAACCCCGCAGGTCGTAACAAACTTGTCTCGGCCGCTCGGGTCGCCCCGTCGAAATCCAGGCTGATTAGTCCGATGAATTTGACCAAGATATTGGCTGCTCTTTTGGTCTCTCTCCCAGTTCTCGTCACCCTCTCTCTCGTTCTTCGAAACCCGTCTCCCGATCGCATCAAACGCTTTGCTGACGCCAGAATTATCGAAAGACTCGTAAAAAATGACACATCATCGTCGTCCAGCTCAGAAGATGGTTTCTCAGATCATACCCACATGCCCAAAGACAAGCTACAAGATGGACTAATTGCTCCTGGATTTCATAAAGCCTCTTGCTTGAGCAGATATCAATCCAATTTATACAGAAAAATTTCACCCCAAAAACCATCTTCTCATCTTCTCTCCAAACTGAGAAGTTATGAACGATCTTCACAAGAAGTGTGGACCCCACACCAAATCCTACAACAAAACCCTAGAACAGCTAAAGTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

10.81

Isoelectric Point (pI)

76.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	47
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	3 cut(s)	41, 54, 81
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	124, 405
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	104, 349
AluBI	AGCT	3 cut(s)	282, 328, 518
AluI	AGCT	3 cut(s)	282, 328, 518
Alw26I	GTCTC	3 cut(s)	79, 160, 207
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	2 cut(s)	124, 405
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	3 cut(s)	30, 166, 402
AsuII	TTCGAA	1 cut(s)	193
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	284, 329, 430
BciT130I	CCWGG	2 cut(s)	106, 351
BcoDI	GTCTC	3 cut(s)	79, 160, 207
BfaI	CTAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	81, 144
BlsI	GCNGC	2 cut(s)	82, 145
Bme1390I	CCNGG	2 cut(s)	106, 351
Bme18I	GGWCC	1 cut(s)	480
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	2 cut(s)	106, 351
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	164, 526
Bse8I	GATNNNNATC	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	106, 351
BseJI	GATNNNNATC	1 cut(s)	385
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	297, 312, 437
BseNI	ACTGG	2 cut(s)	164, 526
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	2 cut(s)	81, 211
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	2 cut(s)	81, 211
BsiHKCI	CYCGRG	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	79, 160, 207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	84
Bsp119I	TTCGAA	1 cut(s)	193
Bsp143I	GATC	4 cut(s)	4, 208, 301, 461
BspACI	CCGC	3 cut(s)	41, 54, 81
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	3 cut(s)	296, 311, 438
BspLI	GGNNCC	1 cut(s)	482
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	164, 526
BssMI	GATC	4 cut(s)	4, 208, 301, 461
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	106, 351
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	193
BstDEI	CTNAG	4 cut(s)	8, 283, 298, 446
BstKTI	GATC	4 cut(s)	7, 211, 304, 464
BstMAI	GTCTC	3 cut(s)	79, 160, 207
BstMBI	GATC	4 cut(s)	4, 208, 301, 461
BstMCI	CGRYCG	2 cut(s)	81, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 219
BstNI	CCWGG	2 cut(s)	106, 351
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	104, 349
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	480
CseI	GACGC	1 cut(s)	239
CspCI	CAANNNNNGTGG	2 cut(s)	458, 493
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	7 cut(s)	80, 109, 143, 282, 328, 365, 518
CviKI_1	RGCY	7 cut(s)	80, 109, 143, 282, 328, 365, 518
DdeI	CTNAG	4 cut(s)	8, 283, 298, 446
DpnI	GATC	4 cut(s)	6, 210, 303, 463
DpnII	GATC	4 cut(s)	4, 208, 301, 461
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	480
Eco52I	CGGCCG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	104, 349
EcoRV	GATATC	1 cut(s)	383
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	306, 314, 360, 397, 456
FatI	CATG	1 cut(s)	312
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	81, 144
Fsp4HI	GCNGC	2 cut(s)	81, 144
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	2 cut(s)	81, 144
HaeIII	GGCC	1 cut(s)	80
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	316
HinfI	GANTC	2 cut(s)	14, 249
HphI	GGTGA	3 cut(s)	30, 166, 402
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	4 cut(s)	9, 120, 286, 301
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	2 cut(s)	100, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 219
HpyF3I	CTNAG	4 cut(s)	8, 283, 298, 446
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	4, 208, 301, 461
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	9 cut(s)	10, 42, 91, 118, 177, 247, 292, 336, 363
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	62, 172
MalI	GATC	4 cut(s)	6, 210, 303, 463
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	4 cut(s)	4, 208, 301, 461
MboII	GAAGA	5 cut(s)	182, 299, 417, 425, 456
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	124, 237, 342, 391, 405
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	3 cut(s)	21, 188, 376
MroXI	GAANNNNTTC	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	106, 351
MvaI	CCWGG	2 cut(s)	106, 351
MwoI	GCNNNNNNNGC	2 cut(s)	89, 219
NdeII	GATC	4 cut(s)	4, 208, 301, 461
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	82, 145
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	104, 349
PspGI	CCWGG	2 cut(s)	104, 349
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	211
SatI	GCNGC	2 cut(s)	81, 144
Sau3AI	GATC	4 cut(s)	4, 208, 301, 461
Sau96I	GGNCC	1 cut(s)	480
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	106, 351
SetI	ASST	4 cut(s)	61, 284, 330, 520
SfaNI	GCATC	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	193
SinI	GGWCC	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	5 cut(s)	124, 237, 342, 391, 405
SsiI	CCGC	3 cut(s)	41, 54, 81
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	104, 349
TaqI	TCGA	3 cut(s)	98, 193, 243
TasI	AATT	5 cut(s)	124, 237, 342, 391, 405
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	137, 347, 471
VpaK11BI	GGWCC	1 cut(s)	480
XapI	RAATTY	2 cut(s)	124, 405
XceI	RCATGY	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.