Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

32129909 .. 32130409

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTTGCAAATGCCTATGTAAGTATATGTATAGAATGCCAACACACCAAGTTAATCAAAACTTATACCTACATATTTCCGGAAGCGTCGTTGTTCCTCCCCACGGATTTCCCCCTTAAAAATCAGTTTGCCACCTTGGATCAGAAATCTCCACATTGTCATGGGGAAATGGTGAGGAAGAGCAACCTCACAAATACGGACAAGTCACTGCTGTCATCTTTTGTGTATCTCCATCTATCCCATGATTATAATGATCAAGATAAGCTTTTCTTCTGCAACCAAGATCAAGATTTTCTCGAAAAGATACCGCGGTTGATCGTGAGGACGGATTACTATTTTGTCCCATCTCTTTTCTTGATCCCATCTTTTGAGCAAGAACTCAGTAATCTCTTTCCAAGGAAAGAAACAGTTTTCCATTTCTTGGGTCGGTACCTGTTCGGCTGCTTCATCCCACAAATGTGGTCTGGGGACTTATTACTAGATACTATCAGGCATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

166

Amino Acids

19.59

Weight (kDa)

6.13

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	20 - 146	5.2e-44	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccII	CGCG	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	79
AciI	CCGC	2 cut(s)	308, 310
AclWI	GGATC	2 cut(s)	147, 352
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	103, 421
AleI	CACNNNNGTG	1 cut(s)	457
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	2 cut(s)	147, 352
Aor13HI	TCCGGA	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	441
Asp718I	GGTACC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	428
BccI	CCATC	3 cut(s)	240, 352, 370
BclI	TGATCA	1 cut(s)	253
BfaI	CTAG	1 cut(s)	479
BisI	GCNGC	1 cut(s)	442
BlsI	GCNGC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	431
BsaJI	CCNNGG	4 cut(s)	102, 135, 308, 395
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 421
BseAI	TCCGGA	1 cut(s)	79
BseDI	CCNNGG	4 cut(s)	102, 135, 308, 395
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	2 cut(s)	103, 421
BseMII	CTCAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	326, 482
BslI	CCNNNNNNNGG	2 cut(s)	103, 421
BsmFI	GGGAC	2 cut(s)	326, 482
BsmI	GAATGC	1 cut(s)	41
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	139, 253, 283, 315, 357
BspACI	CCGC	2 cut(s)	308, 310
BspCNI	CTCAG	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	2 cut(s)	147, 352
BspQI	GCTCTTC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	429
BssECI	CCNNGG	4 cut(s)	102, 135, 308, 395
BssMI	GATC	5 cut(s)	139, 253, 283, 315, 357
BssT1I	CCWWGG	2 cut(s)	135, 395
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	380
BstDSI	CCRYGG	2 cut(s)	102, 308
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	5 cut(s)	142, 256, 286, 318, 360
BstMBI	GATC	5 cut(s)	139, 253, 283, 315, 357
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	459
BtgI	CCRYGG	2 cut(s)	102, 308
BtsCI	GGATG	1 cut(s)	447
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	6
Cfr42I	CCGCGG	1 cut(s)	311
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	161, 242
CviJI	RGCY	2 cut(s)	265, 441
CviKI_1	RGCY	2 cut(s)	265, 441
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	5 cut(s)	141, 255, 285, 317, 359
DpnII	GATC	5 cut(s)	139, 253, 283, 315, 357
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	135, 395
EcoT14I	CCWWGG	2 cut(s)	135, 395
ErhI	CCWWGG	2 cut(s)	135, 395
FaeI	CATG	2 cut(s)	164, 245
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 254, 286
FaqI	GGGAC	2 cut(s)	326, 482
FatI	CATG	2 cut(s)	160, 241
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	442
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	442
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	1 cut(s)	442
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	164, 245
HindIII	AAGCTT	1 cut(s)	263
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	6 cut(s)	80, 257, 287, 296, 319, 355
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	8, 276
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	164, 245
Kpn2I	TCCGGA	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	311
Kzo9I	GATC	5 cut(s)	139, 253, 283, 315, 357
LguI	GCTCTTC	1 cut(s)	173
LpnPI	CCDG	4 cut(s)	93, 446, 450, 475
Lsp1109I	GCAGC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	5 cut(s)	141, 255, 285, 317, 359
MboI	GATC	5 cut(s)	139, 253, 283, 315, 357
MboII	GAAGA	2 cut(s)	190, 262
MnlI	CCTC	4 cut(s)	107, 168, 197, 315
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	2 cut(s)	53, 117
MslI	CAYNNNNRTG	2 cut(s)	159, 457
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	80
Mva1269I	GAATGC	1 cut(s)	41
MvnI	CGCG	1 cut(s)	310
NdeII	GATC	5 cut(s)	139, 253, 283, 315, 357
NlaIII	CATG	2 cut(s)	164, 245
NlaIV	GGNNCC	1 cut(s)	431
NmuCI	GTSAC	1 cut(s)	204
OliI	CACNNNNGTG	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	173
PctI	GAATGC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	431
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	159, 457
SacII	CCGCGG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	53, 117
SatI	GCNGC	1 cut(s)	442
Sau3AI	GATC	5 cut(s)	139, 253, 283, 315, 357
SetI	ASST	5 cut(s)	71, 137, 189, 267, 435
Sfr303I	CCGCGG	1 cut(s)	311
SgrBI	CCGCGG	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	159, 457
SsiI	CCGC	2 cut(s)	308, 310
SspMI	CTAG	1 cut(s)	479
StyI	CCWWGG	2 cut(s)	135, 395
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	53, 117
Tru9I	TTAA	2 cut(s)	53, 117
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	1 cut(s)	441
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	3 cut(s)	119, 212, 341
TspRI	CASTG	1 cut(s)	213
Van91I	CCANNNNNTGG	1 cut(s)	421
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.