Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

67554886 .. 67555809

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG368000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCTCTTCTCACAAACAGAGTCCTTTTTCTTGACCCCAGAAAAGACGTGCCTGACCTCTTTTGTGAAACAATTTCCACATAAATCATGGCTACTCCCCAACAGCTTCCCCATCAAAAATCAATTTTACAAGTTTGATCAGAACTCTCCTAGTTGTTTCGGGAATATGTTGAGAAAAACTAATAACACATCAGAATTATCACTACCGTCATCACGCCATCTTTTGAGCAAGGAGCTTAACAAGTTGTTCCCTCAGAAAGAAACTGTTTTCAACTTGGGAAGGTACCTTTTCCACCCCTCAAACCATGTATGGGGACTAATCACAAGGTACTATCAAGCTTATTTGGCAGAGGCAGACCAGAGGATTGGGATTCAAATTCAAAGTTTTGAACCGCAGGGCTACAGTCGATTTCAGCATGTAATGGACCAAATTTTAGCTTGTGCTTTCAATGAGAAATTGCTGCCTCTAGTGGAGAAGAATAAGCCCATTGTGACAACTCCTCTGAACCCAAAATTGAAATCAATACTGATTACTTGTTTATTACCAGAATGCTTTAAGAAAATGAGGAATATGTATTCGGAATACCCAACTTTGACCGGTGACATAATTGCAGTTTTCCAGCCAACCCATGAAGAGCATCAAAAGACAGATGGAGTGCATGACAGAAAAACCTCGGCAGAAATATTGCTGCTAAGCTTTTCTAATGTGTTGGTCACAAGTGCGGAGTCTACATTTGGGTATGTGGCTCAAAGTGTTCTATTCATTCCTGAAAATCAAATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

261

Amino Acids

30.11

Weight (kDa)

8.71

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	17 - 64	2e-08	Xyloglucan fucosyltransferase
XG_FTase	PF03254	76 - 252	9e-59	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	728
AciI	CCGC	2 cut(s)	392, 722
AcsI	RAATTY	2 cut(s)	375, 429
AfaI	GTAC	2 cut(s)	284, 329
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	6 cut(s)	271, 374, 380, 389, 448, 517
AjiI	CACGTC	1 cut(s)	48
AluBI	AGCT	5 cut(s)	105, 235, 338, 437, 696
AluI	AGCT	5 cut(s)	105, 235, 338, 437, 696
ApeKI	GCWGC	2 cut(s)	460, 688
ApoI	RAATTY	2 cut(s)	375, 429
AsiGI	ACCGGT	1 cut(s)	596
Asp718I	GGTACC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	447, 675
BccI	CCATC	3 cut(s)	119, 225, 644
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	2 cut(s)	150, 467
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	2 cut(s)	461, 689
BlpI	GCTNAGC	1 cut(s)	692
BlsI	GCNGC	2 cut(s)	462, 690
Bme18I	GGWCC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	284
BmsI	GCATC	1 cut(s)	646
Bpu1102I	GCTNAGC	1 cut(s)	692
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	596
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	447, 675
BshNI	GGYRCC	1 cut(s)	282
BshTI	ACCGGT	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	554
Bsp143I	GATC	1 cut(s)	136
Bsp1720I	GCTNAGC	1 cut(s)	692
BspACI	CCGC	2 cut(s)	392, 722
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	284
BspQI	GCTCTTC	2 cut(s)	11, 627
BspT107I	GGYRCC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	596
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	3 cut(s)	207, 265, 404
Bst6I	CTCTTC	2 cut(s)	11, 627
BstDEI	CTNAG	2 cut(s)	252, 692
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	447, 675
BstXI	CCANNNNNNTGG	1 cut(s)	365
BtrI	CACGTC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	283, 328
CspAI	ACCGGT	1 cut(s)	596
CviAII	CATG	5 cut(s)	87, 305, 416, 629, 659
CviQI	GTAC	2 cut(s)	283, 328
DdeI	CTNAG	2 cut(s)	252, 692
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	11, 627
EarI	CTCTTC	2 cut(s)	11, 627
Eco47I	GGWCC	1 cut(s)	424
FaeI	CATG	5 cut(s)	90, 308, 419, 632, 662
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	5 cut(s)	86, 304, 415, 628, 658
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	728
Fnu4HI	GCNGC	2 cut(s)	461, 689
Fsp4HI	GCNGC	2 cut(s)	461, 689
FspBI	CTAG	2 cut(s)	150, 467
GluI	GCNGC	2 cut(s)	461, 689
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	5 cut(s)	90, 308, 419, 632, 662
HindIII	AAGCTT	2 cut(s)	336, 694
HinfI	GANTC	3 cut(s)	20, 370, 725
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	1 cut(s)	729
Hpy188I	TCNGA	5 cut(s)	141, 193, 255, 504, 580
Hpy188III	TCNNGA	3 cut(s)	31, 160, 767
Hpy8I	GTNNAC	1 cut(s)	729
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	3 cut(s)	207, 265, 404
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	611, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	252, 692
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	5 cut(s)	90, 308, 419, 632, 662
KpnI	GGTACC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	2 cut(s)	11, 627
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	8 cut(s)	51, 65, 371, 380, 558, 610, 632, 780
Lsp1109I	GCAGC	2 cut(s)	447, 675
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	2 cut(s)	150, 467
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	490, 599, 712
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	487, 644
MluCI	AATT	8 cut(s)	71, 122, 194, 375, 429, 455, 512, 606
MlyI	GAGTC	2 cut(s)	29, 734
MnlI	CCTC	9 cut(s)	67, 261, 307, 343, 354, 474, 510, 558, 682
MseI	TTAA	2 cut(s)	237, 555
MspI	CCGG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	5 cut(s)	90, 308, 419, 632, 662
NlaIV	GGNNCC	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	653
NmuCI	GTSAC	3 cut(s)	490, 599, 712
NspI	RCATGY	1 cut(s)	419
PciSI	GCTCTTC	2 cut(s)	11, 627
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	370
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	2 cut(s)	462, 690
PleI	GAGTC	2 cut(s)	28, 733
PpsI	GAGTC	2 cut(s)	28, 733
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	284, 329
RsaNI	GTAC	2 cut(s)	283, 328
SapI	GCTCTTC	2 cut(s)	11, 627
SaqAI	TTAA	2 cut(s)	237, 555
SatI	GCNGC	2 cut(s)	461, 689
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	2 cut(s)	29, 734
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	8 cut(s)	71, 122, 194, 375, 429, 455, 512, 606
SsiI	CCGC	2 cut(s)	392, 722
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	150, 467
TaaI	ACNGT	3 cut(s)	207, 265, 404
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	406
TasI	AATT	8 cut(s)	71, 122, 194, 375, 429, 455, 512, 606
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	2 cut(s)	237, 555
Tru9I	TTAA	2 cut(s)	237, 555
TseFI	GTSAC	3 cut(s)	490, 599, 712
TseI	GCWGC	2 cut(s)	460, 688
Tsp45I	GTSAC	3 cut(s)	490, 599, 712
TspDTI	ATGAA	2 cut(s)	645, 751
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	2 cut(s)	375, 429
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	728
XspI	CTAG	2 cut(s)	150, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.