Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

64383629 .. 64384180

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG394100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGACCAAATTTTAGCTTGTGCTTTCAATGAGAAATTGCTGCCTCTAGTGGAGAAGAATAAGCCCATTGTGACAACTCCTCTGAACCCAAAACTGAAATCAGTACTGATTACTTGTTTATTACCAGAATGCTATAAGAAAATGAGGAATATGTATTCGGAATACCCAACTTTGACTGGTGACATAATTGCGGTTTTCCAGCCAAGCCATGAAGAGCATCAAAAGACAGATGAAGTGCATGACAGAAAAACCTTGGCAGAAATATTCCTGCTAAGCTTTTCTGATGTGTTGGTCACAAGTGCGAAGTCTACATTTGGGTATGTGGCTCAAAGTCTTAGAGATCTTAAACCATGGGTTCTATTCATTCCTGAAAATCAAACGGTCCAAAATCCGCCTTGTCGTCGGGTCATGTCATTAAAGCCTTGTTTTCATGCTCCCCAACTTGGGACTGCAAAGCAAAGAAAGAAAGAAATTGATACAGGGGCACTTGTACCTCATGTGAGACATTGTGAGGATTTCAGCTGGGGTCTTCAGCTAGTTGAGAGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

183

Amino Acids

20.88

Weight (kDa)

8.19

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	2 - 147	6.1e-49	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	2 cut(s)	191, 392
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	105, 492
AfiI	CCNNNNNNNGG	2 cut(s)	443, 444
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	4 cut(s)	17, 276, 522, 535
AluI	AGCT	4 cut(s)	17, 276, 522, 535
Alw26I	GTCTC	1 cut(s)	496
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	4, 382
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	4, 382
BaeGI	GKGCMC	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	496
BfaI	CTAG	2 cut(s)	47, 536
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	41
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	42
BmcAI	AGTACT	1 cut(s)	105
Bme18I	GGWCC	2 cut(s)	4, 382
BmgT120I	GGNCC	2 cut(s)	4, 382
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	521
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	252, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	443, 444
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	252, 350
BseLI	CCNNNNNNNGG	2 cut(s)	443, 444
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	443, 444
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	1 cut(s)	340
Bsp1720I	GCTNAGC	1 cut(s)	272
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	2 cut(s)	191, 392
BspQI	GCTCTTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	252, 350
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	2 cut(s)	252, 350
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	272, 335
BstDSI	CCRYGG	1 cut(s)	350
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BtgI	CCRYGG	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	4, 382
Csp6I	GTAC	2 cut(s)	104, 491
CviAII	CATG	6 cut(s)	209, 239, 351, 409, 431, 497
CviJI	RGCY	9 cut(s)	17, 64, 202, 207, 276, 326, 421, 522, 535
CviKI_1	RGCY	9 cut(s)	17, 64, 202, 207, 276, 326, 421, 522, 535
CviQI	GTAC	2 cut(s)	104, 491
DdeI	CTNAG	2 cut(s)	272, 335
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	252, 350
Eco47I	GGWCC	2 cut(s)	4, 382
Eco57I	CTGAAG	1 cut(s)	515
EcoT14I	CCWWGG	2 cut(s)	252, 350
ErhI	CCWWGG	2 cut(s)	252, 350
FaeI	CATG	6 cut(s)	212, 242, 354, 412, 434, 500
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	6 cut(s)	208, 238, 350, 408, 430, 496
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	2 cut(s)	47, 536
GluI	GCNGC	1 cut(s)	41
GsaI	CCCAGC	1 cut(s)	526
Hin1II	CATG	6 cut(s)	212, 242, 354, 412, 434, 500
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	544
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	3 cut(s)	84, 160, 283
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	405
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	238, 452
HpyF3I	CTNAG	2 cut(s)	272, 335
Hsp92II	CATG	6 cut(s)	212, 242, 354, 412, 434, 500
Kzo9I	GATC	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	7 cut(s)	138, 162, 212, 281, 381, 465, 508
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	2 cut(s)	47, 536
MaeIII	GTNAC	3 cut(s)	70, 179, 292
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	3 cut(s)	67, 224, 521
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	487
MluCI	AATT	4 cut(s)	9, 35, 186, 471
MnlI	CCTC	5 cut(s)	54, 90, 138, 504, 505
MseI	TTAA	2 cut(s)	345, 416
MspA1I	CMGCKG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	212, 242, 354, 412, 434, 500
NmuCI	GTSAC	3 cut(s)	70, 179, 292
PciSI	GCTCTTC	1 cut(s)	207
PctI	GAATGC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	4, 382
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	522
RsaI	GTAC	2 cut(s)	105, 492
RsaNI	GTAC	2 cut(s)	104, 491
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	345, 416
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	4, 382
ScaI	AGTACT	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	6 cut(s)	19, 254, 278, 496, 524, 537
SfaNI	GCATC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	4, 382
Sse9I	AATT	4 cut(s)	9, 35, 186, 471
SsiI	CCGC	2 cut(s)	191, 392
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	2 cut(s)	47, 536
StyI	CCWWGG	2 cut(s)	252, 350
TaaI	ACNGT	1 cut(s)	382
TasI	AATT	4 cut(s)	9, 35, 186, 471
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	2 cut(s)	345, 416
Tru9I	TTAA	2 cut(s)	345, 416
TseFI	GTSAC	3 cut(s)	70, 179, 292
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	3 cut(s)	70, 179, 292
TspDTI	ATGAA	4 cut(s)	225, 246, 352, 419
VpaK11BI	GGWCC	2 cut(s)	4, 382
XapI	RAATTY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	2 cut(s)	47, 536
ZrmI	AGTACT	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.