Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Forward (+)

32130689 .. 32130862

Gene Structure 174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45003

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAGGAGTATCAACAAACTGAGAAGCATACACACAAGTGCACAACCGAAAAGAGCATGTTCCGAAATGTATTTGCTAAGCTTGACGGATGTGTTGATCACAATCTCATGGTCGACTTTTGGTTATGTGGCGCAGAGTCTAGGTGGGCTGACGCCATGGATAACCGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

57

Amino Acids

6.33

Weight (kDa)

9.1

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XG_FTase	PF03254	12 - 54	8.5e-13	Xyloglucan fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	152
AleI	CACNNNNGTG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	43
Alw44I	GTGCAC	1 cut(s)	39
ApaLI	GTGCAC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	43
BclI	TGATCA	1 cut(s)	96
BfaI	CTAG	1 cut(s)	140
BlpI	GCTNAGC	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	77
Bsp19I	CCATGG	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	96
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	20, 77
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	94
CfoI	GCGC	1 cut(s)	133
CseI	GACGC	1 cut(s)	160
CviAII	CATG	3 cut(s)	57, 108, 156
CviJI	RGCY	2 cut(s)	81, 148
CviKI_1	RGCY	2 cut(s)	81, 148
DdeI	CTNAG	2 cut(s)	20, 77
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	3 cut(s)	60, 111, 159
FaiI	YATR	5 cut(s)	29, 58, 109, 126, 157
FatI	CATG	3 cut(s)	56, 107, 155
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	113
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	132
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	60, 111, 159
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	41, 114
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	2 cut(s)	41, 114
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	20, 77
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	3 cut(s)	60, 111, 159
HspAI	GCGC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	140
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	145
MslI	CAYNNNNRTG	1 cut(s)	36
MspI	CCGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	60, 111, 159
NspI	RCATGY	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	36
SalI	GTCGAC	1 cut(s)	112
Sau3AI	GATC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	2 cut(s)	83, 145
SgeI	CNNG	6 cut(s)	48, 69, 94, 120, 152, 168
SmiMI	CAYNNNNRTG	1 cut(s)	36
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	155
TaqI	TCGA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	39
XceI	RCATGY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.