Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397081.1

Orthogroup ID

OG0001503

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1018

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1007 bp

ctgaagaagaagtttaatggaaagagcactggtgcaacagatgagtgcaagtatgtggtatggatagctaatagtggcttgggaaacagaatactgagtataaccgcagcattcctatatgctctgctcacaaacagagtccttctccttgaccctggaaaggacttgcctgacctcttttgtgagccattttcagacacatcatggcttctctccaatcacttccccattaaaagccactttgacaagttcgatcagaaatctcctcgttgttacggtaacatgttgaaaaagactagtaattcatcggaattgtcactaccatcgtcgtacgtatatctccatctaggccatgattatgatcagcaagacaagttgtttttctgtgatgaagagcagagtcatcttgggaaagtagactggttggttatgaaaacggataactactttgtcccatcacttttcttgatgccatcttttgagcaagaacttaacaagttgttccctgaaagagagactgttttccaccacttgggtaggtatctcttccacccttcaaatcatgtatgggggctaatcacaaggtactaccaagcttatttggcaaaggccgacgagatggttgggattcaagtaagaactttcgagcctgctgggcctggtccttttaagcatgtgatggatcaaattttagcttgtgtttttagtgagaaattgttgcctcgagtggatgagaacaagcctattgtggacttcagttcatcgtcagggaccccgaagttgaaatcggtactgatgacttctttaaaaccagattactctgagaatttgaggagtatgtattgggaacatccaactgtgactggggacttaattggggttttccaacccagccatgaaggagagcaaaggactgatgataaactgcatgacagaaaagccttagcagaaatgtttctactcagtttctctgatgtgttggtcacaagtgcatggtcaacatttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009969 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0042546 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0070085 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XG_FTase

Protein Analysis

336

Amino Acids

38.46

Weight (kDa)

6.12

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03220
fragaria_vesca	FvH4_4g30950 FvH4_5g14640
malus_domestica	MD00G1081500.v1.1 MD14G1203600.v1.1 MD16G1068500.v1.1 MD16G1068600.v1.1 MD16G1068700.v1.1
prunus_persica	Prupe.1G278500_v2.0.a1 Prupe.5G196900_v2.0.a1
pyrus_communis	pycom14g16840 pycom16g05990 pycom16g06000
rosa_chinensis	RchiOBHm_Chr3g0485401 RchiOBHm_Chr3g0485411 RchiOBHm_Chr4g0439291 RchiOBHm_Chr4g0439301 RchiOBHm_Chr7g0181851
rosa_laevigata	RLG00000005169 RLG00000006282 RLG00000006284 RLG00000023152
rosa_multiflora	Rmu_co8397081.1_g000001 Rmu_sc0006598.1_g000004 Rmu_sc0006598.1_g000006 Rmu_sc0007912.1_g000001 Rmu_sc0021327.1_g000004 Rmu_ssc0000171.1_g000019
rosa_roxburghii	Rroxscaffold_3G00271700 Rroxscaffold_5G00380250
rosa_rugosa	Rorug04G0317200 Rorug04G0317200 Rorug06G0444400
rosa_samantha	Rh4AG368000 Rh4AG368100 Rh4BG379900 Rh4BG380000 Rh4CG394100 Rh4CG394200 Rh4CG394300 Rh4DG374300 Rh4DG374400 Rh7AG046700 Rh7BG046300 Rh7CG046800 Rh7DG045900
rosa_wichuraiana	Rw0G005600 Rw0G011610 Rw3G023710 Rw5G028570 Rw7G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	690
AcsI	RAATTY	2 cut(s)	687, 826
AcuI	CTGAAG	2 cut(s)	23, 739
AfaI	GTAC	3 cut(s)	332, 587, 792
AfiI	CCNNNNNNNGG	2 cut(s)	160, 532
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	289, 558, 632, 784
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	2 cut(s)	154, 658
AluBI	AGCT	3 cut(s)	68, 596, 695
AluI	AGCT	3 cut(s)	68, 596, 695
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	690
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	3 cut(s)	349, 609, 656
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	2 cut(s)	687, 826
Asp700I	GAANNNNTTC	1 cut(s)	954
AspS9I	GGNCC	3 cut(s)	656, 662, 771
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	2 cut(s)	662, 771
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	6 cut(s)	331, 351, 463, 481, 613, 673
BciT130I	CCWGG	2 cut(s)	156, 660
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	509
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	2 cut(s)	297, 347
BglI	GCCNNNNNGGC	1 cut(s)	655
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	156, 660
Bme18I	GGWCC	2 cut(s)	662, 771
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	3 cut(s)	656, 662, 771
BmiI	GGNNCC	2 cut(s)	772, 773
BmrFI	CCNGG	2 cut(s)	156, 660
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
Bpu10I	CCTNAGC	1 cut(s)	943
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 532
Bse1I	ACTGG	3 cut(s)	34, 425, 868
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	156, 660
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	736, 850
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	160, 532
BseMII	CTCAG	3 cut(s)	86, 813, 976
BseNI	ACTGG	3 cut(s)	34, 425, 868
BseRI	GAGGAG	2 cut(s)	255, 847
BseXI	GCAGC	1 cut(s)	119
BseYI	CCCAGC	2 cut(s)	653, 890
BshFI	GGCC	3 cut(s)	351, 611, 658
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	723
BsiWI	CGTACG	1 cut(s)	330
BslFI	GGGAC	3 cut(s)	437, 784, 881
BslI	CCNNNNNNNGG	2 cut(s)	160, 532
BsmAI	GTCTC	1 cut(s)	509
BsmFI	GGGAC	3 cut(s)	437, 784, 881
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	351, 611, 658
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	253, 361, 682
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	351, 611, 658
BspCNI	CTCAG	3 cut(s)	87, 814, 975
BspLI	GGNNCC	2 cut(s)	772, 773
BspPI	GGATC	1 cut(s)	690
BspQI	GCTCTTC	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	34, 425, 868
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	253, 361, 682
Bst2UI	CCWGG	2 cut(s)	156, 660
Bst4CI	ACNGT	3 cut(s)	278, 520, 859
Bst6I	CTCTTC	2 cut(s)	387, 551
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	4 cut(s)	95, 822, 943, 962
BstF5I	GGATG	2 cut(s)	736, 850
BstKTI	GATC	3 cut(s)	256, 364, 685
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	3 cut(s)	253, 361, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	602, 655
BstNI	CCWGG	2 cut(s)	156, 660
BstNSI	RCATGY	2 cut(s)	286, 677
BstSCI	CCNGG	2 cut(s)	154, 658
BstSNI	TACGTA	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	351, 611, 658
BtsCI	GGATG	2 cut(s)	736, 850
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	651
Cfr13I	GGNCC	3 cut(s)	656, 662, 771
Csp6I	GTAC	3 cut(s)	331, 586, 791
CviAII	CATG	8 cut(s)	204, 283, 353, 563, 674, 896, 929, 993
CviQI	GTAC	3 cut(s)	331, 586, 791
DdeI	CTNAG	4 cut(s)	95, 822, 943, 962
DpnI	GATC	3 cut(s)	255, 363, 684
DpnII	GATC	3 cut(s)	253, 361, 682
DraI	TTTAAA	1 cut(s)	807
Eam1104I	CTCTTC	2 cut(s)	387, 551
EarI	CTCTTC	2 cut(s)	387, 551
Eco105I	TACGTA	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	662, 771
Eco57I	CTGAAG	2 cut(s)	23, 739
Eco88I	CYCGRG	1 cut(s)	723
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	154, 658
FaeI	CATG	8 cut(s)	207, 286, 356, 566, 677, 899, 932, 996
FaqI	GGGAC	3 cut(s)	437, 784, 881
FatI	CATG	8 cut(s)	203, 282, 352, 562, 673, 895, 928, 992
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	2 cut(s)	743, 837
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	297, 347
GluI	GCNGC	1 cut(s)	108
GsaI	CCCAGC	2 cut(s)	657, 894
HaeIII	GGCC	3 cut(s)	351, 611, 658
Hin1II	CATG	8 cut(s)	207, 286, 356, 566, 677, 899, 932, 996
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	3 cut(s)	138, 400, 628
Hpy166II	GTNNAC	3 cut(s)	418, 751, 999
Hpy188I	TCNGA	5 cut(s)	196, 258, 310, 823, 973
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	3 cut(s)	418, 751, 999
Hpy99I	CGWCG	2 cut(s)	331, 617
HpyAV	CCTTC	3 cut(s)	152, 564, 893
HpyCH4III	ACNGT	3 cut(s)	278, 520, 859
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	4 cut(s)	35, 48, 928, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	602, 655
HpyF3I	CTNAG	4 cut(s)	95, 822, 943, 962
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	8 cut(s)	207, 286, 356, 566, 677, 899, 932, 996
KflI	GGGWCCC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	253, 361, 682
LguI	GCTCTTC	1 cut(s)	387
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	2 cut(s)	297, 347
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	5 cut(s)	272, 278, 315, 859, 982
MalI	GATC	3 cut(s)	255, 363, 684
MboI	GATC	3 cut(s)	253, 361, 682
MboII	GAAGA	4 cut(s)	16, 19, 404, 538
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	6 cut(s)	301, 311, 687, 713, 826, 873
MlyI	GAGTC	2 cut(s)	147, 409
MmeI	TCCRAC	2 cut(s)	878, 910
MnlI	CCTC	4 cut(s)	185, 276, 732, 825
MroXI	GAANNNNTTC	1 cut(s)	954
MseI	TTAA	6 cut(s)	15, 231, 492, 669, 806, 872
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	156, 660
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	2 cut(s)	156, 660
MwoI	GCNNNNNNNGC	2 cut(s)	602, 655
NdeII	GATC	3 cut(s)	253, 361, 682
NlaIII	CATG	8 cut(s)	207, 286, 356, 566, 677, 899, 932, 996
NlaIV	GGNNCC	2 cut(s)	772, 773
NmuCI	GTSAC	3 cut(s)	315, 859, 982
NspI	RCATGY	2 cut(s)	286, 677
PaeR7I	CTCGAG	1 cut(s)	723
PciI	ACATGT	1 cut(s)	282
PciSI	GCTCTTC	1 cut(s)	387
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	954
PfeI	GAWTC	1 cut(s)	628
Pfl23II	CGTACG	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	2 cut(s)	146, 408
PpsI	GAGTC	2 cut(s)	146, 408
Ppu21I	YACGTR	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	771
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	154, 658
PspFI	CCCAGC	2 cut(s)	653, 890
PspGI	CCWGG	2 cut(s)	154, 658
PspLI	CGTACG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	772, 773
PspPI	GGNCC	3 cut(s)	656, 662, 771
PspPPI	RGGWCCY	1 cut(s)	771
PspXI	VCTCGAGB	1 cut(s)	723
RsaI	GTAC	3 cut(s)	332, 587, 792
RsaNI	GTAC	3 cut(s)	331, 586, 791
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	387
SaqAI	TTAA	6 cut(s)	15, 231, 492, 669, 806, 872
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	253, 361, 682
Sau96I	GGNCC	3 cut(s)	656, 662, 771
SchI	GAGTC	2 cut(s)	147, 409
ScrFI	CCNGG	2 cut(s)	156, 660
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	7 cut(s)	70, 177, 336, 542, 587, 598, 697
SfaNI	GCATC	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	723
SinI	GGWCC	2 cut(s)	662, 771
SlaI	CTCGAG	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SnaBI	TACGTA	1 cut(s)	334
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	6 cut(s)	301, 311, 687, 713, 826, 873
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	297, 347
StyD4I	CCNGG	2 cut(s)	154, 658
TaaI	ACNGT	3 cut(s)	278, 520, 859
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	252, 645, 724
TasI	AATT	6 cut(s)	301, 311, 687, 713, 826, 873
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	6 cut(s)	15, 231, 492, 669, 806, 872
Tru9I	TTAA	6 cut(s)	15, 231, 492, 669, 806, 872
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	3 cut(s)	315, 859, 982
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	3 cut(s)	315, 859, 982
TspDTI	ATGAA	5 cut(s)	294, 405, 446, 750, 912
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	2 cut(s)	662, 771
XapI	RAATTY	2 cut(s)	687, 826
XceI	RCATGY	2 cut(s)	286, 677
XhoI	CTCGAG	1 cut(s)	723
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	954
XspI	CTAG	2 cut(s)	297, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.